Table 2.

Lowest RMSD and DI models for 25 structures with and without models generated using fragments from the reference structures.

PDB	Lowest RMSD Model		Lowest DI Model
	With reference fragments	Without reference fragments	With reference fragments	Without reference fragments
1RLG	1.034	9.267	1.25	16.14
3SIU	3.480	3.480	4.55	4.55
1OOA	5.005	5.005	7.22	7.22
2OZB	3.291	3.291	3.76	3.76
1MJI	3.246	3.246	4.27	4.27
2HW8	0.450	0.450	0.50	0.50
1I6U	0.532	2.137	0.63	2.59
1F1T	5.060	5.060	7.30	7.30
1ZHO	1.089	1.315	1.21	1.46
1S03	5.088	5.186	6.38	6.66
1XJR	8.025	8.025	10.97	10.97
2VPL	0.428	10.427	0.48	12.55
1U63	3.408	3.408	4.37	4.37
2PXB	5.065	5.065	6.10	6.10
1DK1	1.008	1.060	1.18	1.18
1MMS	0.647	0.647	0.73	0.73
1Y39	0.717	1.018	0.81	1.15
1KXK	0.544	5.759	0.62	7.65
2OIU	1.004	17.768	1.06	23.20
4LCK	0.729	22.498	0.83	30.54
3D2G	1.460	1.460	1.64	1.64
2HOJ	2.504	2.504	3.03	3.03
2GDI	4.976	4.976	6.71	6.71
2GIS	0.919	0.947	1.05	1.07
1LNG	0.858	14.362	0.96	19.43

The bold values indicate a change in the lowest RMSD or DI when models using fragments from the reference structure are removed.