Table 1.
Number of SNPs observed (in parentheses: number not observed in dbSNP version 142) across the Montpellier strains
| Type | All Genotypes | Include one (sub) species | Exclude one (sub) species | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
|
|||||||||
| M. m. castaneus | M. m. domesticus | M. m. musculus | M. spretus | M. m. castaneus | M. m. domesticus | M. m. musculus | M. spretus | ||
| All SNPs | 1460057 (275780) | 423044 (50233) | 673858 (72241) | 713103 (100122) | 957550 (104101) | 1404809 (241355) | 1374654 (236018) | 1296270 (203381) | 1043512 (192527) |
| Non-synonymous | 77439 (18496) | 22230 (2947) | 39558 (6068) | 33688 (6204) | 52373 (6196) | 74073 (16292) | 71556 (14505) | 70305 (13779) | 54783 (13601) |
| Synonymous | 166048 (35833) | 52873 (6708) | 88900 (10993) | 76383 (11432) | 114176 (12887) | 158386 (30904) | 155812 (28991) | 153004 (27667) | 120723 (25575) |
| UTR_5_PRIME | 22412 (5210) | 6966 (914) | 11579 (1447) | 10217 (1694) | 15566 (2109) | 21425 (4565) | 21119 (4401) | 20438 (4006) | 16040 (3513) |
| UTR_3_PRIME | 155676 (35115) | 46086 (6455) | 77481 (9577) | 71698 (12568) | 104339 (12898) | 148707 (30520) | 146639 (29816) | 140354 (25927) | 112167 (24907) |
| Intronic | 740923 (127641) | 214331 (23643) | 317763 (29848) | 372879 (48261) | 486745 (49911) | 715231 (112058) | 701972 (112323) | 654260 (92930) | 521351 (87140) |
| Intergenic | 297559 (53485) | 80558 (9566) | 138577 (14308) | 148238 (19963) | 184351 (20100) | 286987 (47016) | 277556 (45982) | 257909 (39072) | 218448 (37791) |