Table 2.
Details of primers used for amplification and sequencing in this study.
Locus1 | Primer Name | Primer sequence (5′→3′) | Annealing temperature (°C) | Orientation | Reference |
---|---|---|---|---|---|
ITS | V9G | TTA CGT CCC TGC CCT TTG TA | 52 | Forward | de Hoog & Gerrits van den Ende (1998) |
ITS4 | TCC TCC GCT TAT TGA TAT GC | 52 | Reverse | White et al. (1990) | |
LSU | LSU1Fd | GRA TCA GGT AGG RAT ACC CG | 52 | Forward | Crous et al. (2009c) |
LR5 | TCC TGA GGG AAA CTT CG | 52 | Reverse | Vilgalys & Hester (1990) | |
rpb2 | fRPB2-5F | GAY GAY MGW GAT CAY TTY GG | 60→58→54 | Forward | Liu et al. (1999) |
RPB2-5F2 | GGG GWG AYC AGA AGA AGG C | 60→58→54 | Forward | Sung et al. (2007) | |
Rpb2-F1 | GGT GTC AGT CAR GTG YTG AA | 60→58→54 | Forward | Videira et al. (2015a) | |
Rpb2-F4 | GAY YTB GCI GGI CCI YTI ATG GC | 60→58→54 | Forward | Videira et al. (2016) | |
Rpb2-F5 | GCN ACI GGI AAY TGG GG | 60→58→54 | Forward | This study | |
Rpb2-F6 | AAR GCI GGT GTI AGY CAR GT | 60→58→54 | Forward | This study | |
fRPB2-7cR | CCC ATR GCT TGY TTR CCC AT | 60→58→54 | Reverse | Liu et al. (1999) | |
Rpb2-R1 | TCC TCN GGV GTC ATG ATR ATC AT | 60→58→54 | Reverse | Videira et al. (2015a) | |
Rpb2-R3 | ATC ATN GMN GGR TGR ATY TC | 60→58→54 | Reverse | This study |
ITS: internal transcribed spacers and intervening 5.8S nrDNA; LSU: large subunit (28S) of the nrRNA gene operon; rpb2 partial RNA polymerase II second largest subunit gene.