Table 1.
List of the OsGATA genes: chromosome no; locus ID of the genes as annotated in RGAP version 7; nomenclature of the putative GATA transcripts where genes are named according to Reyes et al. (2004) and a and b denotes the alternative splice products of the same gene; subfamily of the GATA gene member; domain composition of the putative GATA transcription factor as deduced by SMART and pfam databases; start and end of the CDS coordinates on the respective chromosome; orientation of the promoter; number of exons in the gene structure; number of introns in the gene; amino acid length; predicted pI and molecular weight of the OsGATA proteins.
| Chr | Locus ID | Nomenclature | Subfamily | Domains | Gene start | Gene end | Strand | Exons | Introns | Amino acid length | Predicted pI | Molecularweight (kDa) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chr1 | LOC_Os01g24070.1 | OsGATA8a | II | GATA, LLM | 13570607 | 13573322 | + | 2 | 1 | 131 | 9.4 | 14.13801 |
| Chr1 | LOC_Os01g24070.2 | OsGATA8b | II | GATA, LLM | 13570660 | 13573125 | + | 3 | 2 | 101 | 9.57 | 10.98943 |
| Chr1 | LOC_Os01g74540.1 | OsGATA10 | II | GATA, LLM | 43172094 | 43173178 | − | 2 | 1 | 142 | 9.45 | 15.56477 |
| Chr1 | LOC_Os01g47360.1 | OsGATA9 | II | GATA, HAN | 27055960 | 27056849 | − | 2 | 1 | 242 | 6.63 | 24.92279 |
| Chr1 | LOC_Os01g54210.1 | OsGATA1 | I | GATA | 31180196 | 31182456 | − | 2 | 1 | 387 | 6.16 | 40.61048 |
| Chr2 | LOC_Os02g05510.1 | OsGATA17a | VI | TIFY, CCT, GATA | 2664370 | 2668170 | + | 7 | 6 | 328 | 5.01 | 34.85652 |
| Chr2 | LOC_Os02g05510.3 | OsGATA17b | VI | TIFY, CCT, GATA | 2664370 | 2668170 | + | 6 | 5 | 304 | 4.99 | 32.38363 |
| Chr2 | LOC_Os02g43150.1 | OsGATA2a | I | GATA | 25996914 | 25999176 | + | 3 | 2 | 431 | 8.67 | 45.06084 |
| Chr2 | LOC_Os02g43150.2 | OsGATA2b | I | GATA | 25996914 | 25999176 | + | 4 | 3 | 424 | 8.33 | 44.1476 |
| Chr2 | LOC_Os02g12790.1 | OsGATA11 | II | GATA, LLM | 6705604 | 6707734 | − | 3 | 2 | 353 | 9.39 | 37.63795 |
| Chr2 | LOC_Os02g56250.1 | OsGATA3 | I | GATA | 34408089 | 34413407 | + | 2 | 1 | 418 | 5.53 | 43.83134 |
| Chr3 | LOC_Os03g05160.1 | OsGATA4 | I | GATA | 2506064 | 2507173 | + | 2 | 1 | 219 | 9.04 | 23.36916 |
| Chr3 | LOC_Os03g52450.1 | OsGATA19a | VI | TIFY, CCT, GATA | 30094292 | 30099092 | − | 8 | 7 | 271 | 8.86 | 24.35872 |
| Chr3 | LOC_Os03g52450.2 | OsGATA19b | VI | GATA,CCT | 30094292 | 30099080 | − | 7 | 6 | 223 | 6.14 | 29.02771 |
| Chr3 | LOC_Os03g47970.1 | OsGATA18a | VI | TIFY, CCT, GATA | 27269705 | 27274117 | − | 8 | 7 | 319 | 4.56 | 34.1237 |
| Chr3 | LOC_Os03g47970.2 | OsGATA18b | VI | TIFY, CCT, GATA | 27271016 | 27274117 | − | 5 | 4 | 257 | 4.58 | 27.9051 |
| Chr3 | LOC_Os03g03850.1 | OsGATA27 | III | GATA | 1733298 | 1734113 | − | 1 | 0 | 271 | 6.39 | 28.96747 |
| Chr3 | LOC_Os03g61570.2 | OsGATA12 | II | GATA, LLM | 34913404 | 34914861 | + | 3 | 2 | 136 | 9.87 | 15.09632 |
| Chr3 | LOC_Os03g08370.1 | OsGATA22 | VII | GATA, FAR1, MULE, SWIM | 4272870 | 4277474 | + | 5 | 4 | 732 | 7.56 | 83.39103 |
| Chr4 | LOC_Os04g45650.2 | OsGATA5 | I | GATA | 27000814 | 27003617 | + | 2 | 1 | 376 | 8.02 | 40.00403 |
| Chr4 | LOC_Os04g46020.1 | OsGATA21a | IV | GATA | 27260209 | 27264560 | − | 6 | 5 | 450 | 7.17 | 49.3862 |
| Chr4 | LOC_Os04g46020.2 | OsGATA21b | IV | GATA | 27260209 | 27264560 | − | 5 | 4 | 362 | 8.03 | 40.42826 |
| Chr5 | LOC_Os05g44400.1 | OsGATA6 | I | GATA | 25832469 | 25834622 | + | 2 | 1 | 386 | 6.32 | 39.44034 |
| Chr5 | LOC_Os05g06340.1 | OsGATA13 | II | GATA, LLM | 3245204 | 3247503 | − | 5 | 4 | 225 | 8.75 | 24.6188 |
| Chr5 | LOC_Os05g50270.1 | OsGATA15 | II | GATA, HAN | 28817605 | 28818871 | + | 2 | 1 | 279 | 6.74 | 28.29209 |
| Chr5 | LOC_Os05g49280.1 | OsGATA14 | II | GATA, HAN | 28271822 | 28272850 | − | 2 | 1 | 250 | 8.51 | 25.60681 |
| Chr6 | LOC_Os06g37450.1 | OsGATA16 | II | GATA, LLM | 22155053 | 22157061 | + | 3 | 2 | 390 | 9.42 | 41.08366 |
| Chr6 | LOC_Os06g48534.1 | OsGATA20 | VI | TIFY, CCT, GATA | 29365981 | 29370366 | − | 6 | 6 | 292 | 4.96 | 31.5719 |
| Chr7 | LOC_Os07g42400.1 | OsGATA23a | VII | GATA, FAR1, MULE, SWIM | 25371994 | 25376165 | + | 5 | 4 | 742 | 7.98 | 84.4357 |
| Chr7 | LOC_Os07g42400.2 | OsGATA23b | VII | GATA, FAR1, MULE, SWIM | 25371994 | 25376165 | + | 4 | 4 | 732 | 8.17 | 83.18586 |
| Chr10 | LOC_Os10g40810.1 | OsGATA7 | I | GATA | 21943291 | 21945186 | + | 2 | 1 | 387 | 7.4 | 39.62075 |
| Chr10 | LOC_Os10g32070.1 | OsGATA24 | V | GATA, GATA, GATA | 16847405 | 16849151 | − | 3 | 2 | 528 | 8.09 | 57.3008 |
| Chr11 | LOC_Os11g08410.1 | OsGATA28 | III | GATA | 4432776 | 4434071 | − | 1 | 0 | 431 | 6.76 | 44.55654 |
| Chr12 | LOC_Os12g42970.1 | OsGATA25 | I | GATA | 26693519 | 26696516 | + | 2 | 1 | 309 | 7.54 | 34.8304 |
| Chr12 | LOC_Os12g07120.1 | OsGATA26 | V | GATA, GATA | 3496286 | 3497437 | + | 1 | 0 | 383 | 10.03 | 40.2071 |