Table 2. The membrane topology prediction methods used in the current study.
Topology predictor | Algorithm | Reference |
---|---|---|
TMHMM 2.0 | HMM | Krogh et al. (2001) |
HMMTOP | HMM | Tusnady & Simon (2001) |
PHOBIUS | HMM | Kall, Krogh & Sonnhammer (2004) |
S-TMHMM | HMM | Viklund & Elofsson (2004) |
TOPPRED | Hydrophobicity profiles | Vonheijne (1992) |
SCAMPI-single | Hydrophobicity + Model | Bernsel et al. (2008) |
MEMSAT 1.0 | ANN + Grammer | Jones Taylor & Thorton (1994) |