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. 2017 Nov 15;5:e4051. doi: 10.7717/peerj.4051

Table 2. The membrane topology prediction methods used in the current study.

Topology predictor Algorithm Reference
TMHMM 2.0 HMM Krogh et al. (2001)
HMMTOP HMM Tusnady & Simon (2001)
PHOBIUS HMM Kall, Krogh & Sonnhammer (2004)
S-TMHMM HMM Viklund & Elofsson (2004)
TOPPRED Hydrophobicity profiles Vonheijne (1992)
SCAMPI-single Hydrophobicity + Model Bernsel et al. (2008)
MEMSAT 1.0 ANN + Grammer Jones Taylor & Thorton (1994)