Table 4.
Datasets | One step classifier | Two step classifier | Channel currents | ||
---|---|---|---|---|---|
Datasets | NDrugs | Original model Accuracy (Feature) | Cdrug = EFTPC | Cdrug = IC60,hERG | |
Dataset 1 (Mirams et al., 2011) |
31 | 97 (APD90) | 90 (97) | 100 (100) | IKr& ICaV |
Dataset 2 (Kramer et al., 2013) |
55 | 91 () | 89 (82) | 95 (95) | IKr & ICaV |
Dataset 3 (Okada et al., 2015) |
12 | 100 () | 58 (66) | 92 (92) | IKr & ICaV |
66 (66*) | 100 (92*) | IKr, ICaV & INaL | |||
Dataset 4 (Lancaster and Sobie, 2016) |
86 | 87 (APD50 & Diastolic Ca2+) | 85 (85) | 89 (90) | IKr & ICaV |
Dataset 5 (Crumb et al., 2016) |
30 | 83 (83) | 83 (83) | IKr & ICaV | |
80 (83*) | 80 (83*) | IKr, ICav & INaL | |||
Dataset 6 (Ando et al., 2017) |
36 | 83 (APD prolongation and EAD (iPSCs)) | 86 (83) | 86 (86) | IKr & ICaV |
Dataset 7 (Li et al., 2017) |
12 | 100 | 92 (92) | 92 (92) | IKr & ICaV |
100 (92*) | 100 (100*) | IKr, ICaV & INaL | |||
Dataset 8 | 197 | 79 (79) | 85 (86) | IKr & ICaV |
The total number of drugs in the particular dataset are reported in the NDrugs column. Table also lists the feature used for classification in the original methods and corresponding scores if applicable. The last column shows a list of channel currents used to construct the classifiers. For comparision with the classification accuracy obtained with the direct features, we reported the highest accuracy obtained for the classifiers from the 13 derived features in isolation at different pacing rate/cell type in the bracket in One step and Two step classifier columns.
The derived features were extracted from simulations of the drug-induced block of all the reported ion channel currents in the in-vitro assay datasets.