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. 2017 Nov 14;8:816. doi: 10.3389/fphar.2017.00816

Table 4.

Binary TdP classifier scores of one-step and two-step classification on the direct features for the eight datasets.

Datasets One step classifier Two step classifier Channel currents
Datasets NDrugs Original model Accuracy (Feature) Cdrug = EFTPC Cdrug = IC60,hERG
Dataset 1
(Mirams et al., 2011)
31 97 (APD90) 90 (97) 100 (100) IKr& ICaV
Dataset 2
(Kramer et al., 2013)
55 91 (-log(IC50,hERGIC50,CaV)) 89 (82) 95 (95) IKr & ICaV
Dataset 3
(Okada et al., 2015)
12 100 (CDrug,ArrhythmiaEFTPC) 58 (66) 92 (92) IKr & ICaV
66 (66*) 100 (92*) IKr, ICaV & INaL
Dataset 4
(Lancaster and Sobie, 2016)
86 87 (APD50 & Diastolic Ca2+) 85 (85) 89 (90) IKr & ICaV
Dataset 5
(Crumb et al., 2016)
30 83 (83) 83 (83) IKr & ICaV
80 (83*) 80 (83*) IKr, ICav & INaL
Dataset 6
(Ando et al., 2017)
36 83 (APD prolongation and EAD (iPSCs)) 86 (83) 86 (86) IKr & ICaV
Dataset 7
(Li et al., 2017)
12 100 (AUCINaL,drugAUCINaL,control+AUCICaV,drugAUCICaV,control) 92 (92) 92 (92) IKr & ICaV
100 (92*) 100 (100*) IKr, ICaV & INaL
Dataset 8 197 79 (79) 85 (86) IKr & ICaV

The total number of drugs in the particular dataset are reported in the NDrugs column. Table also lists the feature used for classification in the original methods and corresponding scores if applicable. The last column shows a list of channel currents used to construct the classifiers. For comparision with the classification accuracy obtained with the direct features, we reported the highest accuracy obtained for the classifiers from the 13 derived features in isolation at different pacing rate/cell type in the bracket in One step and Two step classifier columns.

*

The derived features were extracted from simulations of the drug-induced block of all the reported ion channel currents in the in-vitro assay datasets.