Table 4.

Number of haplotypes (H), haplotype diversity (H_d), genetic diversity (π), and number of non-synonymous and synonymous substitutions (d_N and d_S) per site of the El Pardo MeRV population based on the CP gene.

Season	N	H	Hd ± SE	π ± SE	dN ± SE	dS ± SE	dN/dS ± SE
Sampling cycle 1
Summer 2013	7	6	0.952 ± 0.036	0.006 ± 0.002	0.005 ± 0.004	0.037 ± 0.012	0.135 ± 0.009
Autumn 2013	8	7	0.964 ± 0.027	0.007 ± 0.002	0.006 ± 0.004	0.050 ± 0.016	0.120 ± 0.012
Spring 2014	5	4	0.900 ± 0.072	0.004 ± 0.002	0.001 ± 0.000	0.028 ± 0.010	0.035 ± 0.000
Cycle1	20	16	0.974 ± 0.014	0.007 ± 0.002	0.015 ± 0.007	0.072 ± 8 × 10-5	0.097 ± 0.011
Sampling cycle 2
Summer 2014	9	6	0.889 ± 0.030	0.008 ± 0.002	0.002 ± 0.002	0.043 ± 0.015	0.047 ± 0.002
Autumn 2014	7	4	0.714 ± 0.068	0.006 ± 0.002	0.004 ± 0.003	0.022 ± 0.009	0.181 ± 0.003
Spring 2015	4	2	0.500 ± 0.133	0.001 ± 0.001	0.003 ± 0.002	0.001 ± 0.000	3.000 ± 0.020
Cycle1	20	12	0.932 ± 0.020	0.005 ± 0.001	0.009 ± 0.020	0.066 ± 0.004	1.076 ± 0.020
Sampling cycle 3
Summer 2015	4	4	1.000 ± 0.089	0.007 ± 0.002	0.006 ± 0.004	0.042 ± 0.014	0.143 ± 0.004
Autumn 2015	10	4	0.778 ± 0.029	0.008 ± 0.001	0.002 ± 0.002	0.045 ± 0.014	0.044 ± 0.002
Spring 2016	15	9	0.848 ± 0.023	0.006 ± 0.002	0.006 ± 0.004	0.053 ± 0.014	0.113 ± 0.004
Cycle1	29	16	0.931 ± 0.016	0.006 ± 0.001	0.018 ± 0.009	0.098 ± 0.024	0.100 ± 0.009

¹Data corresponding to group the sequences of the three stations of a sampling cycle.

N, number of sequences; H, number of haplotypes; H_d, haplotype diversity; π, genetic diversity; SE, standard error.