Table 4.
Significant markers associated with powdery mildew resistance using the EMMA model in the Nordic spring barley panel.
| SNP | Chromosome | Position | p-value | -log10(p) | Marker R2 | Effect | QTL |
|---|---|---|---|---|---|---|---|
| SNP4H_1 | 4H | 102 | 2.03E-10 | 9.69 | 0.27 | 2.8 | QPM.PPP-4H |
| SNP4H_2 | 4H | 99 | 1.28E-09 | 8.89 | 0.25 | 2.0 | |
| SNP4H_3 | 4H | 101 | 1.65E-09 | 8.78 | 0.24 | 2.1 | |
| SNP4H_4 | 4H | 102 | 1.65E-09 | 8.78 | 0.24 | 2.1 | |
| SNP4H_5 | 4H | 101 | 5.21E-09 | 8.28 | 0.23 | 1.9 | |
| SNP4H_6 | 4H | 102 | 2.13E-08 | 7.67 | 0.21 | 1.7 | |
| SNP4H_7 | 4H | 101 | 6.56E-08 | 7.18 | 0.19 | 2.0 | |
| SNP4H_8 | Ua | Ua | 1.55E-07 | 6.81 | 0.18 | 1.5 | |
| SNP4H_9 | 4H | 103 | 8.36E-07 | 6.08 | 0.16 | 1.9 | |
| SNP4H_10 | Ua | Ua | 1.10E-06 | 5.96 | 0.15 | 1.1 | |
| SNP4H_11 | 4H | 104 | 3.57E-06 | 5.45 | 0.14 | 1.3 | |
| SNP4H_12 | 4H | 104 | 3.57E-06 | 5.45 | 0.14 | 1.3 | |
| SNP4H_13 | Ua | Ua | 5.40E-06 | 5.27 | 0.13 | -1.3 | |
| SNP6H_1_1 | 6H | 11 | 5.45E-08 | 7.26 | 0.19 | -2.8 | QPM.PPP-6H-1 |
| SNP6H _2_1 | 6H | 45 | 4.39E-07 | 6.36 | 0.16 | 2.9 | QPM.PPP-6H-2 |
| SNP6H _2_2 | 6H | 49 | 4.39E-07 | 6.36 | 0.16 | 2.9 | |
| SNP6H _3_1 | 6H | 106 | 2.08E-06 | 5.68 | 0.14 | 2.0 | QPM.PPP-6H-3 |
| SNP6H _4_1 | Ub | Ub | 7.31E-07 | 6.14 | 0.16 | 2.4 |
U = genetic chromosomal location currently unknown. a,bChromosome location of SNP markers assigned to 4H and 6H, respectively, based on blast information at plant ensembl: http://plants.ensembl.org/Hordeum_vulgare/Info/Index. R2= sum of the R square, which quantifies goodness of fit in a range between 0.0 and 1.0.