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. 2017 Nov 14;8:1843. doi: 10.3389/fpls.2017.01843

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Copyright © 2017 Quraishi, Pont, Ain, Flores, Burlot, Alaux, Quesneville and Salse.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Genomic and genetic integration of major agronomical traits in bread wheat. A—Wheat genomic and genetic resources. Circle 1—Illustration of the synteny between the n = 12 AGK (color code for A1–A12) and the 21 bread wheat chromosomes (1–21). Circle 2—Illustration of the wheat genes ordered on the 21 chromosomes based on molecular markers (red connecting lines) and synteny with AGK (gray connecting lines). Circle 3—Heat map illustration of the gene density (color code in legend for the number of genes within 20 kbp physical windows) on the 21 chromosomes. Circle 4—Molecular markers bridging (gray connecting lines) the consensus genetic map to the syntenome. Circle 5—Heat map illustration of the marker density (color code in legend for the number of markers within 5 cM genetic intervals) on the 21 chromosomes. Circle 6—Illustration of the MQTL intervals with a color code for yield (blue), protein content (pink), and baking quality (yellow). Center 7—Illustration of the retained homoeologous triplets (A, B, and D copies) on the 21 chromosomes. B—Wheat web viewer. Screen capture of the PlantSyntenyViewer web tool [http://urgi.versailles.inra.fr/synteny-wheat] visualizing the synteny between wheat, Brachypodium, rice, sorghum and delivering the access to the wheat syntenome made of 72,900 genes ordered on the 21 chromosomes as well as the information (populations, traits, flanking markers, trial details) related to the 376 QTLs, 32 MQTLs, and 37 candidate genes described in the current study.