Table 3.
The names, accession number, countries of origin, and references of the sequences used for nucleotide, amino acid, and phylogenetic analyses with the UPM0081 and UPM190 isolates.
| S/number | Sequence | Strain | Accession number | Country | References |
|---|---|---|---|---|---|
| (1) | UPM94/230 | vvIBDV | AY520911.1 | Malaysia | Tan et al., 2004 |
| (2) | UPM94/273 | vvIBDV | AF527039.1 | Malaysia | Kong et al., 2004 |
| (3) | UPM B0081 | vvIBDV | FJ824699.1 | Malaysia | Mohammed et al., 2009 |
| (4) | UPM92-04 | vvIBDV | AF262030.1 | Malaysia | |
| (5) | Strain Harbin | vvIBDV | AF092171.1 | China | Hu & Zhang, 1998 |
| (6) | Strain SA-KZN95 | vvIBDV | KF241548.1 | South Africa | Vukea et al., 2014 |
| (7) | IBDV77/Georgia Vac | Vaccine | JX424076.1 | Nigeria | Adamu, 2012 |
| (8) | Strain Edgar | cell culture adapted | AY462026.1 | USA | Petkov et al., 2007 |
| (9) | South Korea (Strain KSH) | vvIBDV | AF165151.1 | South Korea | Kwon et al., 2000 |
| (10) | UK661 | vvIBDV | X92760.1 | UK | Brown and Skinner, 1996 |
| (11) | GA97 | vIBDV | AY963132.1 | USA | Mickael and Jackwood, 2005 |
| (12) | IRAQ12.I27-743 | IBDV | KC352669.1 | Kurdistan and Iraq | Gergis and Jackwood, 2013 |
| (13) | ISR13 | vvIBDV | AY907012.1 | USA | Jackwood and Sommer, 2005 |
| (14) | UPM0081EP12 | vvIBDV | KY411641 | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 |
| (15) | UPM190EP12 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
|
| |||||
| S/number | Name | Strain | Accession number | Country | References |
|
| |||||
| (16) | IBDV/Turkey/PA/00924/14 | Serotype 2 | KP642112.1 | USA | Lu, Tang, Yeh, et al., 2015 |
| (17) | OKYM | vvIBDV | D49706.1 | Japan | Yamaguchi, Ogawa, Inoshima, et al., 1995 |
| (18) | Thai4 classic | caIBDV | AY907014 | Thailand | Jackwood and Sommer, 2005 |
| (19) | JNeto-BR | IBDV | AY780423 | Brazil | Hayashi, Brentano and Ferreira, 2004 |
| (20) | Strain E | vIBDV | AY819703 | USA | Khatri and Sharma, 2004 |
| (21) | Strain IM | vIBDV | AY819702 | USA | Khatri and Sharma, 2004 |
| (22) | Strain STC | caIBDV | AY819701 | USA | Khatri and Sharma, 2004 |
| (23) | Spain 1 | vvIBDV | AY907007 | Spain | Jackwood and Sommer, 2005 |
| (24) | D78 | vvIBDV | EU162087.1 | USA | Jackwood, D. J., Sreedevi, LeFever et al., 2008 |
| (25) | Strain B00/81 (Pre-adaptation) | vvIBDV | AY520910.1 | Malaysia | Tan et al., 2004 |
| (26) | HK46 | vvIBDV | AF092943 | Hong Kong | Lim, Cao, Yu et al., 1999 |
| (27) | Cevac-Gumbo-L | Vaccine | EU544158 | Brazil | Gomes, Abreu, Resende et al., 2008 |
| (28) | Singapore97S181 | IBDV | DQ916216 | Singapore | Jackwood and Sommer-Wagner, 2006 |
| (29) | OH strain | Serotype 2 | U30818.1 | Canada | Kibenge, McKenna and Dybing, 1995 |
| (30) | UPM190BGMP15 | vvIBDV | KY418010 | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 |
| (31) | UPM190BGMP20 | vvIBDV | KY418009 | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 |
| (32) | UPM0081BGMP20 | vvIBDV | KY418011 | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 |
| (33) | UPM04/190 (Pre-adaptation) | vvIBDV | KU958716.1 | Malaysia | Liew, Hair-Bejo, Omar et al., 2016 |
| (34) | UPM190EP1 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (35) | UPMBGMP0081P15 | vvIBDV | KY418012 | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 |
| (36) | UPMBGMP0081P16 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (37) | UPMBGMP0081P17 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (38) | UPMBGMP0081P18 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (39) | UPMBGMP0081P19 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (40) | UPMBGMP0081P10 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (41) | UPMBGMP0081P5 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (42) | UPMBGMP0081P1 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (43) | UPMBGMP190P16 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (44) | UPMBGMP190P17 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (45) | UPMBGMP190P18 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (46) | UPMBGMP190P19 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (47) | UPMBGMP190P10 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (48) | UPMBGPM190P5 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (49) | UPMBGMP190P1 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (50) | UPM190EP1 | vvIBDV | Malaysia | Lawal, Hair-Bejo, Arshad, et al., 2016 | |
| (51) | South Korean IBDV | vvIBDV | AF508177.1 | South Korea | Kim and Yeo, 2002 |