Table 3.
SNP | N | Pg | Pi | Pn | Tf | Td | Cr | Fn | Aa |
---|---|---|---|---|---|---|---|---|---|
rs6940* | |||||||||
1.1 | 781 | 2.22 (0.06) | 2.55 (0.07) | 2.68 (0.07) | 2.43 (0.06) | 2.61 (0.07) | 2.66 (0.07) | 2.86 (0.08) | 2.57 (0.06) |
1.2 | 255 | 2.27 (0.10) | 2.71 (0.13) | 2.51 (0.13) | 2.49 (0.11) | 2.53 (0.12) | 2.72 (0.11) | 2.96 (0.13) | 2.74 (0.10) |
2.2 | 17 | 3.54 (0.43) ‡ | 3.01 (0.54) | 3.47 (0.52) | 3.50 (0.45)† | 3.11 (0.48) | 3.69 (0.48)† | 3.94 (0.55) | 2.99 (0.44) |
Fold change | 274.34 | 58.41 | 120.34 | 191.54 | 64.87 | 180.11 | 194.47 | 52.20 | |
rs1057028* | |||||||||
1.1 | 711 | 2.24 (0.06) | 2.62 (0.08) | 2.71 (0.08) | 2.42 (0.07) | 2.63 (0.07) | 2.67 (0.07) | 2.86 (0.08) | 2.59 (0.06) |
1.2 | 300 | 2.21 (0.10) | 2.48 (0.12) | 2.42 (0.12) | 2.46 (0.10) | 2.47 (0.11) | 2.65 (0.11) | 2.90 (0.12) | 2.58 (0.10) |
2.2 | 42 | 2.89 (0.26)† | 3.07 (0.32) | 3.31 (0.31) | 3.13 (0.27)† | 2.92 (0.29) | 3.34 (0.29)† | 3.55 (0.33)† | 3.25 (0.26)† |
Fold change | 91.55 | 56.83 | 82.21 | 103.40 | 33.64 | 95.42 | 99.37 | 93.48 |
haplotype blocks for both SNPs include additional SNPs shown on Table 1.
Genotypes, 1.1: homozygous for the major allele, 1.2: heterozygous, 2.2: homozygous for the minor allele.
Chi-square p-values using 1.1 as the referent category:
p≤0.05,
p≤0.01; fold change comparing 2.2 vs. 1.1