Table 1. Summary of gene content for S. enterica and E. coli isolates analysed in this study.
Section | Description | S. enterica | E. coli |
---|---|---|---|
Number of isolates | 1682 | 943 | |
Core genes | 99 %≤strains≤100 % | 3175 | 1328 |
Accessory genes | 0 %≤strains≤99 % | 20 132 | 91 087 |
Soft core genes | 95 %≤strains<99 % | 236 | 815 |
Shell genes | 15 %≤strains<95 % | 2098 | 3516 |
Cloud genes | 0 %≤strains<15 % | 17 748 | 86 746 |
Total genes | 0 %≤strains≤100 % | 23 307 | 92 415 |