Skip to main content
. Author manuscript; available in PMC: 2018 Dec 1.
Published in final edited form as: Genet Epidemiol. 2017 Sep 6;41(8):756–768. doi: 10.1002/gepi.22068

Table II.

Dimensions of data used for each phenotype in GWAS experiment. Here n is the number of cases, p is the number of predictors (genetic + covariates), and kbest is the best cross-validated model size. Note that kbest includes nongenetic covariates.

Phenotype n p Transform kbest Compute Time (Hours)
BMI 5122 333,656 log 2 1.12
HDL 4729 333,774 none 9 1.28
LDL 4715 333,771 none 6 1.32
TG 4728 333,769 log 10 1.49