Table 3.

Associations in the 99% credible set in the MHC region.

CHR	SNP	POSITION	Tested Allele	OR	P	Probability
6	rs6457617	32771829	C	0.6172	8.06E-09	0.1197
6	rs6457620	32771977	G	0.6172	8.06E-09	0.1197
6	rs9378125	32787710	G	1.664	1.34E-08	0.0732
6	rs5000632	32771666	G	1.665	1.35E-08	0.0727
6	rs9357152	32772938	G	1.665	1.35E-08	0.0727
6	rs9394113	32773145	G	1.665	1.35E-08	0.0727
6	rs9275224	32767856	A	0.6229	1.60E-08	0.0616
6	AA_DQB1_167_32737787_R	32737787	A	1.717	2.05E-08	0.0483
6	AA_DQB1_13_32740798_G	32740798	A	1.708	3.03E-08	0.0331
6	rs9275516	32782621	A	0.6079	3.60E-08	0.0280
6	SNP_DQB1_32737787	32737787	T	1.7	3.79E-08	0.0266
6	SNP_DQB1_32740798	32740798	G	1.7	3.79E-08	0.0266
6	SNP_DQB1_32740759_T	32740759	P	1.7	3.79E-08	0.0266
6	SNP_DQB1_32740760_A	32740760	P	1.7	3.79E-08	0.0266
6	AA_DQB1_13_32740798_A	32740798	P	1.7	3.79E-08	0.0266
6	AA_DQB1_26_32740759_Y	32740759	P	1.7	3.79E-08	0.0266
6	AA_DQB1_167_32737787_H	32737787	P	1.7	3.79E-08	0.0266
6	rs6932517	32786160	C	0.6123	5.38E-08	0.0190
6	SNP_DQB1_32737837	32737837	A	0.627	8.09E-08	0.0128
6	SNP_DQB1_32737148	32737148	G	1.68	9.42E-08	0.0110
6	AA_DQB1_45_32740702	32740702	E	1.68	9.42E-08	0.0110
6	SNP_DQB1_32740702	32740702	T	1.68	9.42E-08	0.0110
6	SNP_DQB1_32742309_A	32742309	P	1.68	9.42E-08	0.0110
6	HLA_DQB1_0301	32739039	P	1.675	1.14E-07	0.0092
6	rs9469220	32766288	G	0.6393	2.24E-07	0.0048
6	rs2856717	32778286	T	0.6255	2.38E-07	0.0045
6	AA_DQB1_26_32740759_L	32740759	A	1.534	5.32E-07	0.0021
6	SNP_DQB1_32740759_A	32740759	A	1.534	5.32E-07	0.0021
6	SNP_DQB1_32740760_G	32740760	A	1.534	5.32E-07	0.0021
6	rs2858324	32768353	T	0.6397	7.11E-07	0.0016
6	rs2647012	32772436	A	0.6397	7.11E-07	0.0016

List of variants and HLA alleles in the MHC locus that are in the 99% credible set. Genome-wide significant variants, HLA alleles and amino acid residues are boldfaced.