Table 2.
Sense/antisense amino acid (aa) types for overlapping codons, F = −2 reading frame.
| Amino acid classes produced by sense:antisense nucleotides | ||||
|---|---|---|---|---|
| nucleotide 2 or 2′ | ||||
| U | C | A | G | |
| nt 1 = U | L, F ∈ Φ | S ∈ π | Y ∈ Φ, stop | C, W, stop |
| nt 1′ = A | I, M ∈ Φ | T ∈ φ | N, K ∈ Π | S, R |
| nt 1 = C | L ∈ Φ | P ∈ φ | H, Q ∈ Π | R ∈ Π |
| nt 1′ = G | V ∈ φ | A ∈ φ | D, E ∈ Π | G ∈ π |
| Sense:antisense nucleotides needed to produce pairs of aa classes | ||||
| sense class | antisense (1′2′3′) aa class | |||
| Φ | φ | Π | π | |
| L, NP = Φ | U1U2:A1′U2′ | U1U2:A1′C2′ | U1U2:A1′A2′ | A1U2:U1′C2′ |
| S, NP = φ | C1C2:G1′U2′ | G1U2:C1′A2′ | G1C2:G1′G2′ | |
| L, P = Π | G1A2:C1′A2′ | C1A2;G1′G2′ | ||
| S, P = π | ambiguous → A1G2:U1′C2′ | |||
The relation between the sense/antisense overlapping codons and the nucleotide numbers are defined in Fig. 6.