Table 2.
Co-expression analysis of the VviLBD genes.
| Unique_ID/Nimblegen probeset | Functional annotation | Functional Categories |
|---|---|---|
| VIT_15s0046g00230 | VviLBDIi1 | LOB domain family transcription factor |
| VIT_15s0046g00240 | VviLBDIi2 | LOB domain family transcription factor |
| VIT_01s0011g03540 | VviLBDIIa3 | LOB domain family transcription factor |
| VIT_10s0003g03490 | GA 2-oxidase | Metabolism. Secondary metabolism. Terpenoid metabolism. Diterpenoid metabolism. Diterpenoid biosynthesis |
| VIT_14s0006g02950 | VviLBDIIa1 | LOB domain family transcription factor |
| VIT_12s0057g00170 | Wound-induced | Response to stimulus. Stress response. Abiotic stress response. wounding |
| VIT_07s0197g00040 | VviLBDIc7 | LOB domain family transcription factor |
| VIT_07s0031g02270 | Tonoplast monosaccharide transporter2 | Transport overview. Electrochemical Potential-driven Transporters. Porters. Major Facilitator Superfamily. Sugar Porter |
| VIT_14s0066g00680 | VviLBDIc2 | LOB domain family transcription factor |
| VIT_11s0016g05450 | Equilibrative nucleoside transporter ENT8 splice variant | Transport overview. Electrochemical Potential-driven Transporters. Porters. Equilibrative Nucleoside Transporter |
| VIT_01s0011g03530 | VviLBDIIa4 | LOB domain family transcription factor |
| VIT_08s0007g04480 | Pectinesterase family | Cellular process.Cellular component organization and biogenesis.Cell wall organization and biogenesis.Cell wall metabolism.Cell wall modification.Pectin modification |
| VIT_06s0004g07790 | VviLBDId6 LBD13 | LOB domain family transcription factor |
| VIT_02s0025g02940 | Caffeic acid O-3-methyltransferase | Metabolism. Secondary metabolism. Phenylpropanoid metabolism. Phenylpropanoid biosynthesis |
| VIT_12s0028g03580 | Lectin-receptor like protein kinase 3 | Signalling. Signalling pathway. Protein kinase |
| VIT_14s0068g01360 | GEM-like protein 5 | Cellular process. Cell growth and death |
| VIT_02s0025g02920 | Quercetin 3-O-methyltransferase 1 | Metabolism. Secondary metabolism. Phenylpropanoid metabolism. Flavonoid metabolism. Flavonoid biosynthesis |
| VIT_15s0048g00830 | VviLBDIa3 | LOB domain family transcription factor |
| VIT_18s0001g15390 | Gaiacol peroxidase | Metabolism. Primary metabolism. Amino acid metabolism. Aromatic amino acid metabolism. Phenylalanine metabolism. Phenylalanine biosynthesis |
| VIT_17s0000g09030 | Disease resistance protein (NBS-LRR class) | Diverse functions. Gene family with diverse functions. NBS-LRR superfamily |
| VIT_15s0048g00500 | Pectinesterase family | Cellular process. Cellular component organization and biogenesis. Cell wall organization and biogenesis. Cell wall metabolism. Cell wall modification. Pectin modification |
| VIT_13s0019g03780 | VviLBDIf6 | LOB domain family transcription factor |
| VIT_07s0031g02280 | MYB divaricata | Development. Reproductive development. Flower development |
| VIT_08s0056g01650 | VviLBDIa1 LBD20 | LOB domain family transcription factor |
| VIT_11s0103g00200 | Anthranilate N-benzoyltransferase | Metabolism. Primary metabolism. Amino acid metabolism. Aromatic amino acid metabolism. Aromatic amino acid biosynthesis |
| VIT_01s0127g00860 | Aborted microspores AMS | Regulation overview. Regulation of gene expression. Regulation of transcription. Transcription factor. bHLH family transcription factor |
| VIT_18s0001g15690 | Endo-1,4-beta-glucanase | Cellular process. Cellular component organization and biogenesis. Cell wall organization and biogenesis. Cell wall metabolism. Cell wall catabolism. Cellulose catabolism |
| VIT_18s0001g15680 | Cellulase | Cellular process. Cellular component organization and biogenesis. Cell wall organization and biogenesis. Cell wall metabolism. Cell wall catabolism. Cellulose catabolism |
| VIT_15s0021g02170 | Chalcone and stilbene synthase | Metabolism. Secondary metabolism. Phenylpropanoid metabolism. Flavonoid metabolism. Flavonoid biosynthesis |
| VIT_17s0000g05490 | VviLBDIi5 | LOB domain family transcription factor |
| VIT_09s0002g04380 | Plastidic glucose transporter 2 | Transport overview. Electrochemical Potential-driven Transporters. Porters. Major Facilitator Superfamily. Sugar Porter |
| VIT_12s0059g02500 | Constans-like 11 | Development. Reproductive development. Flower development |
| VIT_18s0001g13580 | Kinesin motor protein | Cellular process. Cellular component organization and biogenesis. Cytoskeleton organization and biogenesis. Microtubule organization and biogenesis. Microtubule-driven movement |
| VIT_03s0063g00510 | Leucine-rich repeat | Diverse functions. Gene family with diverse functions. NBS-LRR superfamily |
| VIT_06s0009g01830 | Invertase, neutral/alkaline | Metabolism. Primary metabolism. Carbohydrate metabolism. Monosaccharide metabolism. Galactose metabolism |
| VIT_07s0031g01870 | Zinc finger (CCCH-type) family protein | Regulation overview. Regulation of gene expression. Regulation of transcription. Transcription factor. C3H family transcription factor |
| VIT_00s2422g00010 | Hexokinase-2 | Metabolism. Primary metabolism. Carbohydrate metabolism. Glycolysis Gluconeogenesis |
| VIT_00s0288g00050 | V-type H+-transporting ATPase subunit G | Metabolism. Primary metabolism. Generation of metabolite precursors and energy. Electron transport. Respiratory-chain phosphorylation |
| VIT_19s0014g01240 | Morphogenesis of root hair 1 MRH1 | Development. Root development |
| VIT_18s0122g00910 | Mlo5 | Cellular process. Cell growth and death. Cell death |
| VIT_17s0000g07750 | Zinc finger protein 5 | Regulation overview. Regulation of gene expression. Regulation of transcription. Transcription factor. C2H2 family transcription factor |
| VIT_07s0005g01640 | feronia receptor-like kinase | Signalling. Signalling pathway. Protein kinase |
| VIT_00s0225g00170 | Peroxidase | Metabolism. Primary metabolism. Amino acid metabolism. Aromatic amino acid metabolism. Phenylalanine metabolism. Phenylalanine biosynthesis |
For some genes the list of co-expression is not complete. Further details are presented in Supplementary Table 2.