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. 2017 Nov 21;7:15975. doi: 10.1038/s41598-017-16186-8

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© The Author(s) 2017

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

Phylogenetic trees including the genomes of the three L. plantarum analysed here and (A) other 27 complete genomes of L. plantarum, and (B) all L. plantarum genomes available (including both the complete as well as the unfinished sequences). The tree was constructed with Parsnp (https://github.com/marbl/parsnp), using the whole genome sequence of each selected strain. The strain O2T60C is highlighted by a blue circle, while S11T3E and O2T60C by orange ones. The bootstrap values are reported as a value ranging from 0 to 1.