Table 1.
General genomic features and comparative genomics of L. plantarum strains S2T10D, S11T3E and O2T60C, in comparison with the strain P8 (used as guide reference for the re-ordering of the scaffolds) and L. plantarum reference genome WCFS1.
| L. plantarum strains: | S2T10D | S11T3E | O2T60C | P8 | WCFS1 | |
|---|---|---|---|---|---|---|
| General genomic features | Accession no. | MQNK00000000 | MQNL00000000 | MPLC00000000 | NC_021224 | NC_004567 |
| Genome size, Mbps | 3.17 | 3.17 | 3.31 | 3.25 | 3.35 | |
| N° scaffolds | 92 | 58 | 68 | 8 | 4 | |
| GC, content% | 44.48 | 44.49 | 44.41 | 44.55 | 44.45 | |
| No. of CDS | 3,046 | 3,050 | 3,171 | 3,119 | 3,063 | |
| tRNA genes | 45 | 61 | 65 | 68 | 70 | |
| rRNA genes (complete operons) | 6 (1) | 8 (1) | 11 (1) | 6 (4) | 5 (5) | |
| Transposases | 33 | 34 | 49 | 104 | 36 | |
| Prophage clusters (intact) | 3 (2) | 3 (2) | 4 (3) | 2 (2) | 3 (3) |
All data reported are available at https://www.ncbi.nlm.nih.gov/.