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. 2017 Nov 21;2(6):e00141-17. doi: 10.1128/mSystems.00141-17

TABLE 3 .

List of cEper1 DE genes determined with RNA sequencing and DE calling in DESeqc

Category and current GenBank locus taga Locus tag from reference 27b Description Mean expression value for cEper1 in:
 Log2 fold change P value FDR value
Males Females
Genes upregulated in cEper1 in females
    AL022_RS00605 CAHE_0131 30S ribosomal protein S5 353.56 673.17 0.93 <0.001 0.022
    AL022_RS01565 CAHE_0339 DNA-directed RNA polymerase subunit beta′ 1,783.38 3,335.95 0.90 <0.001 0.009
    AL022_RS02585 CAHE_0565 Transcription elongation factor GreA 141.55 264.19 0.90 0.001 0.052
    AL022_RS00600 CAHE_0130 50S ribosomal protein L30 147.84 274.74 0.89 <0.001 0.052
    AL022_RS01110 Aspartate-tRNA ligase 214.87 390.65 0.86 <0.001 0.040
    AL022_RS01125 CAHE_0242 Dipeptide transport system permease protein OppC 212.17 384.43 0.86 <0.001 0.040
    AL022_RS02215 CAHE_0475 30S ribosomal protein S9 213.37 385.64 0.85 0.001 0.052
    AL022_RS01560 CAHE_0338 DNA-directed RNA polymerase subunit beta—rpoB 2,191.78 3,822.27 0.80 <0.001 0.035
    AL022_RS00610 CAHE_0132 50S ribosomal protein L18 111.66 192.77 0.79 0.001 0.079
    AL022_RS03105 CAHE_0678 Hypothetical protein 155.67 268.09 0.78 0.001 0.079
    AL022_RS00470 CAHE_0102 Membrane protein insertase YidC 446.65 750.46 0.75 0.001 0.052
    AL022_RS01545 CAHE_0335 50S ribosomal protein L1 701.12 1,160.67 0.73 0.001 0.057
Genes upregulated in cEper1 in males
    AL022_RS02490 CAHE_0544 Hypothetical protein 459.68 259.51 −0.82 0.002 0.095
    AL022_RS04030 CAHE_p0026 RING domain-containing protein, ankyrin repeats 1,491.23 816.33 −0.87 0.001 0.062
    AL022_RS04035 CAHE_p0027 Hypothetical protein 235.71 117.67 −1.00 0.001 0.052
a

GenBank accession numbers NC_018605.1 and NC_018606.1.

b

GenBank accession numbers HE983995 and HE983996.

c

Mean expression values are normalized counts per gene of female and male wasp replicates.