Table 5.
Mutation a | Exon/intron | Codon b | Predicted effect c | Type d | Original designation | References |
---|---|---|---|---|---|---|
c.13C > T | Exon 1 | 5 | p.Leu5Phe | S | 13C > T | Guarnieri et al. (2012) |
c.14T > C | Exon 1 | 5 | p.Leu5Pro | S1 | c.14T > C | Cavaco et al. (2011) |
c.16del | Exon 1 | 6 | p.Ser6AlafsX15 | ND2 | 16delA | Shattuck et al. (2003b) |
c.23_25delinsGT | Exon 1 | 8 | p.Leu8ArgfsX13 | S | 23TGCG > GTG | Shattuck et al. (2003b) |
c.25C > T | Exon 1 | 9 | p.Arg9X | S | R9X | Cetani et al. (2004) |
c.32del | Exon 1 | 11 | p.Tyr11SerfsX10 | S3 | c.32delA | Domingues et al. (2012)e |
c.34_35insCT | Exon 1 | 12 | p.Asn12ThrfsX10 | ND | c.34_35insCT | Wang et al. (2012)j |
c.34_37del | Exon 1 | 12 | p.Asn12SerfsX8 | S | 34‐37 delAACA | Enomoto et al. (2010)j |
c.40del | Exon 1 | 14 | p.Gln14ArgfsX7 | S | 39delC | Shattuck et al. (2003b) |
c.42del | Exon 1 | 15 | p.Lys15ArgfsX6 | S4 | c.42delG | Guarnieri et al. (2012) |
c.60del | Exon 1 | 21 | p.Lys21ArgfsX5 | S5 | c.60delG | Cetani et al. (2013) |
c.64_73del | Exon 1 | 22 | p.Gly22X | ND6 | 60del10 | Shattuck et al. (2003b) |
c.64G > T | Exon 1 | 22 | p.Gly22X | S7 | c.64G > T | Cetani et al. (2013) |
c.70G > T | Exon 1 | 24 | p.Glu24X | S8 | 70G > T | Shattuck et al. (2003b) |
c.70G > T | Exon 1 | 24 | p.Glu24X | S | E24X | Cetani et al. (2007) |
c.70G > T | Exon 1 | 24 | p.Glu24X | G | c.70G > T | Serrano‐Gonzalez, Shay, Austin, Maceri and Pitukcheewanont (2016) |
c.76del | Exon 1 | 26 | p.Ile26SerfsX11 | S | c.76delA | Howell et al. (2003) |
c.82_85del | Exon 1 | 28 | p.Gly28SerfsX8 | S9 | 82del4 | Shattuck et al. (2003b) |
c.85del | Exon 1 | 29 | p.Glu29SerfsX8 | S10 | c.85delG | Siu et al. (2011) |
c.88_94del | Exon 1 | 30 | p.Phe30GlyfsX5 | S | c.88_94delTTCTCCT | Frank‐Raue et al. (2011)h (rt) |
c.94_95insTA | Exon 1 | 32 | p.Trp32LeufsX6 | S | c.94insTA | Guarnieri et al. (2012) |
c.128G > A | Exon 1 | 43 | p.Trp43X | S | c.128G > A | Haven et al. (2007)f |
c.162C > G | Exon 2 | 54 | p.Tyr54X | S | c.162C > G (Y54X) | Howell et al. (2003) |
c.162C > G | Exon 2 | 54 | p.Tyr54X | S11 | 162C > G | Shattuck et al. (2003b) |
c.162C > G | Exon 2 | 54 | p.Tyr54X | ND | c.162C > G | Wang et al. (2012) |
c.162C > A | Exon 2 | 54 | p.Tyr54X | S12 | c.162C > A | Cavaco et al. (2011)g |
c.165C > A | Exon 2 | 55 | p.Tyr55X | S13 | c.165C > A | Howell et al. (2003) |
c.165del | Exon 2 | 55 | p.Tyr55X | S | c.165delC | Howell et al. (2003) |
c.165del | Exon 2 | 55 | p.Tyr55X | S | c.165delC | Haven et al. (2007)f |
c.176C > T | Exon 2 | 59 | p.Ser59Phe | G | c.176C > T | Haven et al. (2007)f |
c.182T > A | Exon 2 | 61 | p.Leu61X | S | 182T > A | Cetani et al. (2007) |
c.195dup | Exon 2 | 66 | p.Asn66X | S | 195insT | Cetani et al. (2004) |
c.197dup | Exon 2 | 66 | p.Asn66LysfsX16 | S | 195insA | Cetani et al. (2004) |
c.226C > T | Exon 2 | 76 | p.Arg76X | S | c.226C > T | Shattuck et al. (2003b) |
c.226C > T | Exon 2 | 76 | p.Arg76X | G1 | c.226C > T | Cavaco et al. (2011) |
c.226C > T | Exon 2 | 76 | p.Arg76X | G10 | c.226C > T | Siu et al. (2011) |
c.249del | Exon 3 | 84 | p.Pro84LeufsX25 | S5 | c.248delT | Cetani et al. (2013) |
c.260_261del | Exon 3 | 87 | p.Arg87LysfsX3 | G | c.260_261delGA | Wang et al. (2012) |
c.343G > T | Exon 4 | 115 | p.Glu115X | G | E115X | Cetani et al. (2013) |
c.343G > T | Exon 4 | 115 | p.Glu115X | G7 | E115X | Cetani et al. (2013) |
c.375dup | Exon 5 | 126 | p.Arg126ThrfsX5 | G | 373insA | Shattuck et al. (2003b) |
c.415C > T | Exon 5 | 139 | p.Arg139X | G | 415C > T | Cetani et al. (2007) |
c.415C > T | Exon 5 | 139 | p.Arg139X | G | c.415C > T exon 5 | Bricaire et al. (2013)j , h (ut?,rt?,jt?) |
c.513‐1del | Intron 6 | splice [a]i | S13 | IVS6‐1delG | Howell et al. (2003) | |
c.520_523del | Exon 7 | 174 | p.Ser174LysfsX27 | G12 | c.518_521delTGTC | Cavaco et al. (2011)g |
c.544dup | Exon 7 | 182 | p.Ile182AsnfsX11 | G | c.539_544insA, p.Ile182AsnfsX10 | Yu et al. (2015) |
c.626_629del | Exon 7 | 209 | p.Lys209ArgfsX9 | G | c.626_629delAACA | Wang et al. (2012)h(rt) |
c.664C > T | Exon 7 | 222 | p.Arg222X | G | 664C > T | Shattuck et al. (2003b) |
c.664C > T | Exon 7 | 222 | p.Arg222X | G | c.664C > T exon 7 | Bricaire et al. (2013)h (rt) |
c.679_680insAG | Exon 7 | 227 | p.Arg227LysfsX31 | G11 | 679insAG | Shattuck et al. (2003b) |
c.685_688del | Exon 7 | 229 | p.Arg229TyrfsX27 | G | c.679_682delAGAG | Corbetta et al. (2010) |
c.687_688del | Exon 7 | 229 | p.Arg229SerfsX37 | S | c.679_680delAG | Corbetta et al. (2010) |
c.687_688del | Exon 7 | 229 | p.Arg229SerfsX37 | G4 | c.679_680delAG | Guarnieri et al. (2012) |
c.687_688del | Exon 7 | 229 | p.Arg229SerfsX37 | G | c.687_688delAG | Wang et al. (2012) |
c.687_688del | Exon 7 | 229 | p.Arg229SerfsX37 | G | c.687_688delAG | Witteveen et al. (2011)f |
c.691dup | Exon 7 | 231 | p.Trp231LeufsX36 | G | c.692_693insT | Haven et al. (2007)f |
c.693dup | Exon 7 | 232 | p.Arg232GlufsX35 | ND | c.693_694insG | Haven et al. (2007) |
c.700C > T | Exon 7 | 234 | p.Arg234X | ND6 | 700C > T | Shattuck et al. (2003b) |
c.700C > T | Exon 7 | 234 | p.Arg234X | G | R234X | Cetani et al. (2004) |
c.700C > T | Exon 7 | 234 | p.Arg234X | G | 234 CGA to TGA | Enomoto et al. (2010) |
c.736del | Exon 8 | 246 | p.Ser246ProfsX11 | S9 | 732delT | Shattuck et al. (2003b) |
c.750del | Exon 8 | 250 | p.Phe250LeufsX7 | S8 | 746delT | Shattuck et al. (2003b) |
c.1231del | Exon 14 | 411 | p.Gln411ArgfsX17 | ND2 | 1230delC | Shattuck et al. (2003b) |
Gross deletion | G | Whole gene deletion | Bricaire et al. (2013)h(ut) | |||
Gross deletion | G | Whole gene deletion | Caron et al. (2011) | |||
Gross deletion | G3 | Whole gene deletion | Domingues et al. (2012)e |
Mutations are numbered in relation to the cell division cycle 73 (CDC73) cDNA reference sequence (GenBank accession number NM_024529.4) whereby nucleotide +1 corresponds to the A of the ATG‐translation initiation codon. All mutations were analyzed using the Leiden Open Variation Database (LOVD) Mutalyzer sequence variant nomenclature checker (https://www.lovd.nl/mutalyzer/) and annotated using the Human Genome Variation Society (HGVS) guidelines (https://www.hgvs.org/).
Codon numbering starts from initiation codon of CDC73 mRNA.
Predicted effect: splice, splice site mutation; [d] donor splice site; [a] acceptor splice site.
Mutation type: G, germline; S, somatic; ND, not defined. Equal superscript numbers represent germline and/or somatic mutations occurring in the same patient.
Initially reported as a benign parathyroid adenoma, but later reclassified as PC by Yu et al. (2015).
In a posterior publication, most of this cohort was updated by Witteveen et al. (2011).
PC diagnosis disputable since: the tumor recurrence occurred with several cervical nodules of parathyroid tissue (fibrous septae, with low pleomorphism and high proliferative activity); however, during the first surgery, where a typical parathyroid adenoma was removed, the capsule was ruptured, thus raising the possibility of local seeding.
Presence in the affected patient of: rt renal cysts/lesions, and/or ut uterine tumors (if the presence of renal cysts or uterine tumors was unknown, one “?” was added next to the previous superscripts; hjt? was added if the absence of jaw tumors was unknown).
For detailed information of the effect of CDC73 mutation on splicing please consult Hahn et al. (2009).
Criteria for diagnosis of PC not reported.
PC, parathyroid carcinoma.