Table 1.
Putative cis-acting regulatory elements identified in the promoter sequence of BpMYC4 using the PlantCARE database
| Cis element | Position | Sequence | Function of site |
|---|---|---|---|
| 5’UTR Py-rich stretch | +458 | TTTCTTCTCT | cis-acting element conferring high transcription levels |
| ABRE | +773 | CGCACGTGTC | cis-acting element involved in abscisic acid response |
| ATGCAAAT motif | −540 | ATACAAAT | cis-acting regulatory element associated with the TGAGTCA motif |
| CAAT-box | −65, −54, +265, +829, +137, +669, −409, −831, −66, −555, +287, −830, +219, +828, +538 |
CAATT, CAAAT, CAAT, CCAAT |
common cis-acting element in promoter and enhancer regions |
| G-Box | −376, −775, −376, +843, −775 |
CACGTT, CACGTC |
cis-acting regulatory element involved in light response |
| GCN4_motif | −321 | TGTGTCA | cis-regulatory element involved in endosperm expression |
| HSE | −478, −677, −676 | AGAAAATTCG, AAAAAATTTC |
cis-acting element involved in heat stress response |
| MBS | −599 | TAACTG | MYB binding site involved in drought-inducibility |
| Sp1 | +49, −642, −629, −661 | CC(G/A)CCC, GGGCGG | light-responsive element |
| TATA-box | −35, +37, +39, +40, +41, +43, +157, −210, −211, −212, −213, +214, −223, +238, −241, +251, −252, +253, +278, +296, −299, −346, +348, +349, +350, +351, −503, −532, −541, −543, −545, +655, +762, +793, +798, −801 | TATATAAATC, TCTATATATT, TATATATA, ATATAT, TATA,TTTTA, TATAAAAT, TATAAAA, TATAAA,TATAA, TATACA | core promoter element located next to −30 of transcription start |
| TC-rich repeats | +156, −886 | ATTTTCTTCA, GTTTTCTTAC | cis-acting element involved in defense and stress response |
| TGG-motif | −619 | GGTTGCCA | part of a light-responsive element |
| circadian | −432 | CAANNNNATC | cis-acting regulatory element involved in circadian control |