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. 2017 Nov 21;18:893. doi: 10.1186/s12864-017-4299-9

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Maximum likelihood phylogenetic tree of E. faecium. The phylogenetic tree was based on a core genome alignment of 1,545,750 positions that was generated by ParSNP [61]. The tree includes the E. faecium E745 genome sequence generated in this study and the 72 E. faecium whole genome sequences described in Lebreton et al. [4]. The tree was visualized and mid-point rooted using MEGA 7.0.26 [62]. The different E. faecium clades are indicated. The position of E. faecium E745 in the phylogenetic tree is highlighted by an arrow