Table 1. Pairwise comparisons of topological distances between different tree reconstruction methods used.
Tree to tree topological distance metrics used the subtree prune and regraft distance (SPR_DIST), Robinson-Foulds distance (RF_DIST), path distance metric between pairs of taxa (PATH.DIFF_DIST). The ASTRAL trees based on multiple partitions are the ASTRAL RAxML tree using six character-sets (astral_raxmltree), ASTRAL RAxML tree based on single character-sets/partitions (astral_singlepart_raxmltree), ASTRAL MrBayes tree using six character-sets (astral_mrbtree) and ASTRAL MrBayes tree based on single character-sets/partitions (astral_singlepart_mrbtree). Results of lower triangle shown.
| SPR_DIST | raxml_concat | astral_raxmltree | astral_singlepart_raxmltree | astral_mrbtree | astral_singlepart_mrbtree | svdq_tree |
|---|---|---|---|---|---|---|
| raxml_concat | - | |||||
| astral_raxmltree | 5 | - | ||||
| astral_singlepart_raxmltree | 5 | 2 | - | |||
| astral_mrbtree | 7 | 3 | 3 | - | ||
| astral_singlepart_mrbtree | 5 | 1 | 1 | 4 | - | |
| svdq_tree | 3 | 5 | 3 | 5 | 4 | - |
| RF_DIST | raxml_concat | astral_raxmltree | astral_singlepart_raxmltree | astral_mrbtree | astral_singlepart_mrbtree | svdq_tree |
| raxml_concat | - | |||||
| astral_raxmltree | 14 | - | ||||
| astral_singlepart_raxmltree | 14 | 4 | - | |||
| astral_mrbtree | 18 | 8 | 8 | - | ||
| astral_singlepart_mrbtree | 12 | 2 | 2 | 10 | - | |
| svdq_tree | 10 | 10 | 6 | 10 | 8 | - |
| PATH.DIFF_DIST | raxml_concat | astral_raxmltree | astral_singlepart_raxmltree | astral_mrbtree | astral_singlepart_mrbtree | svdq_tree |
| raxml_concat | - | |||||
| astral_raxmltree | 46.5 | - | ||||
| astral_singlepart_raxmltree | 44.8 | 27.7 | - | |||
| astral_mrbtree | 54.4 | 24.1 | 29.1 | - | ||
| astral_singlepart_mrbtree | 37.5 | 23.0 | 15.9 | 33.3 | - | |
| svdq_tree | 42.0 | 33.3 | 19.0 | 32.7 | 24.6 | - |