Table 4.
General features of S. maltophilia D457 genome and mRNA half-lives for D457 and ALB001 strains.
| Chromosome information | S. maltophilia D457 | |
|---|---|---|
| RefSeq | NC_017671.1 | |
| IN SDC | HE798556.1 | |
| Size (Mb) | 4,77 | |
| GC% | 66,8 | |
| Annotated ORF | 4381 | |
| ORF expressing proteins | 4220 | |
| rRNAs | 13 | |
| tRNAs | 73 | |
| Other RNAs | 23 | |
| Pseudogenes | 52 | |
| Data analysis information | D457 | ALB001 |
| Expressed genes (RPKM > 15) | 3119 | 2926 |
| Genes with mRNA half-lives that could not be determineda | 445 | 477 |
| Genes with mRNA half-lives determined | 2674 | 2449 |
| Median gene half-life (min) | 2,74 | 3,00 |
| Mean gene half-life (min) | 2,88 | 3,24 |
| Minimum gene half-life (min) | 1,08 | 1,34 |
| Maximum gene half-life (min) | 11,67 | 30,29 |
| Median gene expression level (RPKM)b | 45 | 43 |
| Mean gene expression level (RPKM)b | 203,61 | 203,31 |
| Minimum gene expression level (RPKM)b | 1 | 1 |
| Maximum gene expression level (RPKM)b | 31718 | 36483 |
aRNA of genes which adjustment of the expression data did not throw a R2 > 0.7 to the logarithmic regression model.
bExpression in mid-exponential phase of S. maltophilia D457 culture growing in LB medium18.