Table 3.
Transcript abundance of TPS genes as per the S. officinalis transcriptome.
| Terpene synthase | Kegg Entry | Unigene ID | Annotation | Length (bp) | EC. No. | Read in leaf | FPKM |
|---|---|---|---|---|---|---|---|
| Monoterpene | K12467 | So|comp422551_c0 | myrcene/ocimene synthase | 203 | 4.2.3.15 | 1 | 2.83 |
| K12467 | So |comp431748_c0 | myrcene/ocimene synthase | 214 | 4.2.3.15 | 2 | 4.24 | |
| K12467 | So |comp11163_c0 | myrcene/ocimene synthase | 387 | 4.2.3.15 | 53 | 16.93 | |
| K12467 | So |comp191_c0 | myrcene/ocimene synthase | 280 | 4.2.3.15 | 3 | 2.15 | |
| K12467 | So |comp189977_c0 | myrcene/ocimene synthase | 458 | 4.2.3.15 | 12 | 2.79 | |
| K15095 | So |comp8961_c0 | (+)-neomenthol dehydrogenase | 256 | 1.1.1.208 | 2 | 1.95 | |
| K15095 | So |comp210403_c0 | (+)-neomenthol dehydrogenase | 433 | 1.1.1.208 | 5 | 1.29 | |
| K15095 | So |comp972_c0 | (+)-neomenthol dehydrogenase | 327 | 1.1.1.208 | 5 | 2.33 | |
| K15095 | So |comp26078_c1 | (+)-neomenthol dehydrogenase | 566 | 1.1.1.208 | 55 | 9.04 | |
| K15095 | So |comp12329_c0 | (+)-neomentholdehydrogenase | 447 | 1.1.1.208 | 14 | 3.4 | |
| K15095 | So |comp10962_c0 | (+)-neomenthol dehydrogenase | 1072 | 1.1.1.208 | 2170.28 | 136.67 | |
| K07385 | So |comp5570_c0 | 1,8-cineole synthase | 354 | 4.2.3.108 | 20 | 7.73 | |
| K07385 | So |comp184887_c0 | 1,8-cineole synthase | 402 | 4.2.3.108 | 8 | 2.37 | |
| K07385 | So |comp144107_c0 | 1,8-cineole synthase | 295 | 4.2.3.108 | 4 | 2.46 | |
| K07385 | So |comp53392_c0 | 1,8-cineole synthase | 453 | 4.2.3.108 | 24 | 5.69 | |
| K07385 | So |comp26990_c0 | 1,8-cineole synthase | 2092 | 4.2.3.108 | 10511.52 | 335.99 | |
| K07385 | So |comp14705_c0 | 1,8-cineole synthase | 1978 | 4.2.3.108 | 1339.74 | 49.23 | |
| K07385 | So |comp18462_c0 | (+)-sabinene synthase | 1182 | 4.2.3.108 | 93 | 7.5 | |
| K15086 | So |comp15872_c0 | (3S)-linalool synthase-1 | 1763 | 4.2.3.25 | 95 | 8.28 | |
| K15086 | So |comp6814_c0 | (3S)-linalool synthase-2 | 1789 | 4.2.3.25 | 116 | 4.41 | |
| Sesquiterpene | K14184 | So |comp101158_c0 | α-humulene/β-caryophyllene synthase | 284 | 4.2.3.57 | 10 | 6.87 |
| K15803 | So |comp26367_c0 | (−)-germacrene D synthase | 1965 | 4.2.3.75 | 777.46 | 39.5 | |
| Diterpene | K13070 | So |comp21612_c0 | momilactone-A synthase | 1348 | 1.1.1.295 | 309 | 18.14 |
| K04124 | So |comp14297_c0 | gibberellin 3-beta-dioxygenase | 1149 | 1.14.11.15 | 97 | 6.17 | |
| K04125 | So |comp19885_c0 | gibberellin 2- oxidase | 1257 | 1.14.11.13 | 319 | 18.23 | |
| K04125 | So |comp436332_c0 | gibberellin 2- oxidase | 217 | 1.14.11.13 | 1 | 1.97 | |
| K04125 | So |comp324252_c0 | gibberellin 2- oxidase | 226 | 1.14.11.13 | 2 | 3.25 | |
| K04125 | So |comp747555_c0 | gibberellin 2- oxidase | 212 | 1.14.11.13 | 1 | 2.22 | |
| K04125 | So |comp5948_c0 | gibberellin 2- oxidase | 274 | 1.14.11.13 | 3 | 2.31 | |
| K04120 | So |comp2895_c0 | ent-copalyl diphosphate synthase | 392 | 5.5.1.13 | 7 | 2.18 | |
| K04120 | So |comp274743_c0 | ent-copalyl diphosphate synthase | 356 | 5.5.1.13 | 6 | 2.29 | |
| K04120 | So |comp246076_c0 | ent-copalyl diphosphate synthase | 488 | 5.5.1.13 | 7 | 1.46 | |
| K04120 | So |comp132266_c0 | ent-copalyl diphosphate synthase | 656 | 5.5.1.13 | 18 | 2.38 | |
| K04120 | So |comp15163_c0 | ent-copalyl diphosphate synthase | 486 | 5.5.1.13 | 21 | 4.45 | |
| K04120 | So |comp350819_c0 | ent-copalyl diphosphate synthase | 209 | 5.5.1.13 | 2 | 4.8 | |
| K04120 | So |comp112536_c0 | ent-copalyl diphosphate synthase | 491 | 5.5.1.13 | 11 | 2.27 | |
| K04120 | So |comp689_c0 | ent-copalyl diphosphate synthase | 544 | 5.5.1.13 | 13 | 2.27 | |
| K04120 | So |comp6575_c0 | ent-copalyl diphosphate synthase | 2713 | 5.5.1.13 | 1174 | 28.26 | |
| K04120 | So |comp2827_c0 | ent-copalyl diphosphate synthase | 246 | 5.5.1.13 | 3 | 3.39 | |
| K04120 | So |comp23218_c0 | ent-copalyl diphosphate synthase | 3679 | 5.5.1.13 | 1267.32 | 25.28 | |
| K04121 | So |comp20544_c0 | ent-kaurene synthase | 1775 | 4.2.3.19 | 992 | 38.08 | |
| K04121 | So |comp21378_c0 | ent-kaurene synthase | 3023 | 4.2.3.19 | 760.01 | 24.46 | |
| K04121 | So |comp22699_c0 | ent-kaurene synthase | 2049 | 4.2.3.19 | 968 | 41.49 | |
| K04121 | So |comp186871_c0 | ent-kaurene synthase | 674 | 4.2.3.19 | 14 | 1.78 | |
| K04121 | So |comp4251_c0 | ent-kaurene synthase | 510 | 4.2.3.19 | 20 | 3.88 | |
| K04123 | So |comp15654_c0 | ent-kaurenoic acid hydroxylase | 1954 | 1.14.13.79 | 212 | 7.43 | |
| K04123 | So |comp338203_c0 | ent-kaurenoic acid hydroxylase | 257 | 1.14.13.79 | 2 | 1.92 | |
| K04123 | So |comp404902_c0 | ent-kaurenoic acid hydroxylase | 324 | 1.14.13.79 | 4 | 1.91 | |
| K04123 | So |comp353538_c0 | ent-kaurenoic acid hydroxylase | 288 | 1.14.13.79 | 2 | 1.32 | |
| K16083 | So |comp1777_c0 | ent-isokaurene C2-hydroxylase | 231 | 4.2.3.103 | 2 | 2.94 | |
| K05282 | So |comp23119_c0 | gibberellin 20-oxidase | 1354 | 1.14.11.12 | 997.41 | 52.75 | |
| K05282 | So |comp210082_c0 | gibberellin 20-oxidase | 466 | 1.14.11.12 | 9 | 2.03 | |
| Triterpene | K15813 | So |comp27006_c0 | beta-amyrin synthase | 3060 | 5.4.99.39 | 14004.17 | 296.25 |
| K15822 | So |comp17362_c0 | beta-amyrin synthase | 2661 | 5.4.99.39 | 1712.24 | 42.09 | |
| K15813 | So |comp16071_c0 | beta-amyrin synthase | 282 | 5.4.99.39 | 13 | 13.23 | |
| K00511 | So |comp26984_c0 | Squalene monooxygenase | 2092 | 1.14.13.132 | 8377.74 | 267.79 | |
| K00511 | So |comp24504_c0 | Squalene monooxygenase | 2141 | 1.14.13.132 | 600 | 18.69 | |
| K00511 | So |comp1139_c0 | Squalene monooxygenase | 326 | 1.14.13.132 | 3 | 1.41 | |
| K00511 | So |comp98442_c0 | Squalene monooxygenase | 263 | 1.14.13.132 | 3 | 2.65 | |
| K00511 | So |comp14919_c0 | Squalene monooxygenase | 492 | 1.14.13.132 | 14 | 3.81 | |
| K00511 | So |comp11693_c0 | Squalene monooxygenase | 211 | 1.14.13.132 | 1 | 2.28 | |
| K00511 | So |comp12366_c0 | Squalene monooxygenase | 594 | 1.14.13.132 | 12 | 1.83 | |
| K00801 | So |comp26757_c1 | farnesyl-diphosphate farnesyltransferase | 1934 | 2.5.1.21 | 3936.99 | 139.91 | |
| K00801 | So |comp29648_c0 | farnesyl-diphosphate farnesyltransferase | 443 | 2.5.1.21 | 228 | 56.24 |