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. 2017 Nov 23;7:16133. doi: 10.1038/s41598-017-16325-1

Table 1.

Characterization of seven plant-associated exclusive proteins families.

Old locus tag  + XAC0435  + XAC0501  + XAC1306  + XAC3072  + XAC3073  + XAC3084 −XAC3647
New locus tag XAC_RS02280 XAC_RS02605 XAC_RS06675 XAC_RS15590 XAC_RS15595 XAC_RS15650 XAC_RS18440
Accession a WP_003486419 WP_015462810 WP_011050833 WP_011052017 WP_015472473 WP_005924753 WP_003484013
Gene name b virK lipA/lesA fucA1 nixE nixF nixL pheA (CMs)
Product b VirK protein Secreted lipase Alpha-L-fucosidase Alpha-L-fucosidase Glycosyl hydrolase Beta-galactosidase Secreted chorismate mutase
COG ---- COG0412 COG3669 COG3669 COG3858 COG1874 COG1605
Start position b 518070 587832 1503221 3595544 3597245 3620253 4326854
End position b 518501 588989 1505149 3597229 3598300 3622094 4326285
Gene Onthology c ---- MF – 0004806 MF – 0004560 MF – 0004560 MF – 0004568 MF – 0004565 MF – 0004106
BP – 0016042 BP – 0005975 BP – 0006004 BP – 0005975 BP – 0005975 BP – 0046417
---- ---- ---- BP – 0006032 ---- ----
Protein ID b AAM35326 AAM35390 AAM36177 AAM37917 AAM37918 AAM37929 AAM38490
Size (aa) b 143 421 642 561 351 613 189
EC number b ---- ---- 3.2.1.51 3.2.1.51 ---- 3.2.1.23 5.4.99.5
Domains prediction d (position) SP (1–22) Abhydrolase_6 (54–366) SP (1–23) SP (1–40) SP (1–21) SP (1–24) SP (1–30)
VirK (25–121) Abhydrolase_5 (88–356) Alpha_L_fucos (39–395) Alpha_L_fucos (87–509) Glyco_18 (24–338) Glyco_hydro_35 (38–357) CM_2 (29–107)
---- LIP (90–211) F5_F8_type_C (502–633) ---- ---- Glyco_hydro_42 (53–207) ----
Cell location e Unknown Unknown Unknown Unknown Unknown Unknown P (9.76)
Genome Island f N N N N N N N
Signal peptide (size) g Y (1–22) Y (1–35) Y (1–23) Y (1–40) Y (1–21) Y (1–23) Y (1–30)
Uniprot Q8PQ93 Q8PQ30 Q8PMW9 Q8PI26 Q8PI25 Q8PI14 Q8PGG9
Protein-protein interactions h AvrXacE1 AmpE NahA β-mannosidase NahA Bga (2x) TyrA
Cellulase (2x) ComL BgaΨ(2x) Glycosyl hydrolase FucA1 BgaΨ AroC
AvrXacE2 RluD Bga Hp (XAC3073) β-mannosidase Dgd P-protein
HrcR GumE Hp (XAC1774) ---- Glycosyl hydrolase Glycosyl hydrolase TrpG
CutC Ketosynthase Hp (XAC3083) ---- TonB α-xylosidase Hp (XAC1130)
VirJ (2x) Hp (XAC0904) Hp (XAC3089) ---- TonB like ---- ----
XcsH Hp (XAC0500) ---- ---- Membrane protein ---- ----
Hp (XAC0434) Hp (XAC3216) ---- ---- TBDR ---- ----
---- Hp (XAC1183) ---- ---- Hp (XAC3703) ---- ----
Protein-chemical Interactions h ---- Octyl glucoside Glucose Fucose ---- Glucose Beta-NAD
---- Chitin Hydroxyl r. Lactose Prephenate
---- Fucose Methanol Melibiose P-hydroxyp.lpy.
---- ---- f-uf Hydroxyl r. Phenylpyruvic.
---- ---- ZWZ ---- Chorismate
---- ---- CTK8J7674 ---- ----
HGT or PI f 0 0 0 0 0 0 0

a – According to NCBI6; b – According to KEGG84; c – According to UniProtKB-EC and Interpro85; d – According to SMART86; e – According to PFAM87; f – According to Island Viewer88; g – According to SignalP, Phobius, and TatP89–91; h – According to STITCH 4.092. “+” – Plus strand; “−” – Minus strand; MF – Molecular function; BP – Biological process; SP – Signal peptide; Y – Yes; N – No; PI – Pathogenicity island.