Table 2.
Significantly enriched KEGG pathways between “Purple Peel” and “Green Peel” figs.
| No. | Pathway | DEGs with pathway annotation | All genes with pathway annotation | P-value | Corrected P-value | Pathway ID |
|---|---|---|---|---|---|---|
| GY vs. PY | ||||||
| 1 | Plant hormone signal transduction | 34 | 227 | 1.96E-11 | 6.13E-09 | ko04075 |
| 2 | Starch and sucrose metabolism | 22 | 281 | 5.22E-07 | 8.17E-05 | ko00500 |
| 3 | Phenylpropanoid biosynthesis | 3 | 182 | 3.38E-05 | 0.003522746 | ko00940 |
| 4 | Alpha-linolenic acid metabolism | 14 | 66 | 8.31E-05 | 0.006499291 | ko00592 |
| GM vs. PM | ||||||
| 1 | Flavonoid biosynthesis | 17 | 52 | 4.02E-08 | 1.06E-05 | ko00941 |
| 2 | Protein processing in endoplasmic reticulum | 32 | 318 | 1.34E-06 | 0.000176186 | ko04141 |
| 3 | Estrogen signaling pathway | 16 | 92 | 3.99E-06 | 0.000349801 | ko04915 |
| GY vs. GM | ||||||
| 1 | Plant hormone signal transduction | 58 | 227 | 9.51E-16 | 3.03E-13 | ko04075 |
| 2 | Phenylpropanoid biosynthesis | 10 | 182 | 8.45E-09 | 1.35E-06 | ko00940 |
| 3 | Flavonoid biosynthesis | 15 | 52 | 3.71E-07 | 3.95E-05 | ko00941 |
| PY vs. PM | ||||||
| 1 | Plant hormone signal transduction | 62 | 227 | 1.36E-10 | 4.45E-08 | ko04075 |
| 2 | Flavonoid biosynthesis | 23 | 52 | 4.44E-07 | 7.26E-05 | ko00941 |
| 3 | Phenylpropanoid biosynthesis | 11 | 182 | 1.39E-05 | 0.001513077 | ko00940 |
GY, “Green Peel” young fruit; PY, “Purple Peel” young fruit; GM, “Green Peel” mature fruit; PM, “Purple Peel” mature fruit. Significant pathways were identified by corrected P ≤ 0.01.