Table 1.
RNA-Seq overview
| Sample name | Raw reads | Clean reads | Q20 (%) | Q30 (%) | Total mapped (%) | Uniquely mapped (%) |
|---|---|---|---|---|---|---|
| V10_1 | 53,944,714 | 52,820,194 | 97.37 | 93.68 | 75.82 | 74.70 |
| V10_2 | 59,160,706 | 57,378,292 | 97.39 | 93.81 | 76.44 | 75.46 |
| V10_3 | 53,875,186 | 51,827,434 | 97.17 | 93.2 | 77.45 | 76.26 |
| NC10_1 | 57,025,992 | 54,713,970 | 96.84 | 92.51 | 77.09 | 75.89 |
| NC10_2 | 60,174,142 | 58,164,444 | 95.01 | 88.06 | 71.81 | 70.75 |
| V18_1 | 58,591,660 | 56,688,518 | 95.1 | 88.24 | 72.40 | 71.34 |
| V18_2 | 63,030,008 | 60,813,608 | 95.05 | 88.16 | 71.95 | 70.89 |
| V18_3 | 44,002,734 | 42,770,420 | 96.75 | 92.22 | 73.96 | 72.89 |
| NC18_1 | 51,089,720 | 48,895,588 | 96.24 | 91.26 | 74.02 | 72.96 |
| NC18_2 | 61,366,046 | 59,972,578 | 97.11 | 93.2 | 75.05 | 73.90 |
| NC18_3 | 68,023,822 | 65,597,914 | 97.36 | 93.79 | 76.15 | 75 |
Abbreviations: V ARV-infected, NC mock-infected