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Databases used for RNA Seq experiments
| Features | SoGI | SUGIT | SAS |
|---|---|---|---|
| Total number of contigs | 121,342 | 107,598 | 43,141 |
| Total number of bases | 88,397,709 | 166,929,028 | 35,730,322 |
| Longest contig (bp) | 4854 | 18,858 | 6193 |
| Shortest contig (bp) | 100 | 307 | 56 |
| N50 (bp) | 729 | 1994 | 827 |
| N75 (bp) | 642 | 1269 | 641 |
SoGI-Saccharum officinarum gene indices; SUGIT-Sugarcane Iso-Seq transcriptome database; SAS-sugarcane assembled sequences; bp- base pairs
