Table 4.

Reads from each genotype with details of mapping to three different databases SoGI, SUGIT and SAS

Code	Top internode				Bottom internode
	Trimmed reads	Reads mapped (%)			Trimmed reads	Reads mapped (%)
		SoGI	SUGIT	SAS		SoGI	SUGIT	SAS
High sugar genotypes
G04	24,837,412	52.12	70.65	54.86	22,869,941	46.03	69.38	52.64
G05	8,578,357	48.63	69.34	57.65	47,973,820	49.63	69.35	52.56
G06	12,971,379	52.41	74.20	56.09	24,967,893	47.72	71.51	54.77
G07	25,204,740	51.85	70.79	55.45	23,694,629	50.42	70.45	55.07
G09	36,810,635	52.11	73.64	56.87	36,366,607	54.16	80.44	56.56
G13	19,443,531	52.45	69.10	51.22	24,196,385	50.35	68.45	54.57
G14	37,845,062	52.38	67.85	56.98	19,172,922	51.38	68.90	55.90
Low sugar genotypes
G01	19,224,245	47.95	70.76	54.87	41,184,328	52.45	78.06	55.75
G02	42,714,286	45.45	66.43	52.42	79,760,012	54.89	70.48	57.26
G10	15,278,340	51.09	72.10	54.05	80,811,427	55.42	81.09	56.65
G16	28,875,842	52.19	75.47	56.07	46,037,690	55.19	80.31	56.07
G18	64,789,858	54.13	71.65	56.69	66,628,598	54.47	72.14	53.71
G19	24,882,334	46.73	67.67	54.39	30,954,783	56.50	72.57	56.97
G20	6,529,582	55.51	73.44	55.82	45,500,054	55.51	80.15	55.82

SoGI-Saccharum officinarum gene indices; SUGIT-Sugarcane Iso-Seq transcriptome database; SAS-sugarcane assembled sequences