Table 1.
SG-Unfed | SG-Fed (72 h) | |||||
---|---|---|---|---|---|---|
Functional class | Number of CDSs | Number of reads | Relative abundance of reads*(%) | Number of CDSs | Number of reads | Relative abundance of reads*(%) |
Cytoskeletal | 301 | 1,108,899 | 3.79 | 304 | 907,896 | 2.23 |
Detoxification | 85 | 58,478 | 0.20 | 92 | 126,600 | 0.31 |
Extracellular matrix/cell adhesion | 291 | 2,025,509 | 6.93 | 302 | 3,084,348 | 7.58 |
Immunity | 111 | 105,175 | 0.36 | 121 | 78,672 | 0.19 |
Amino acid metabolism | 43 | 61,283 | 0.21 | 45 | 81,064 | 0.20 |
Carbohydrate metabolism | 131 | 258,736 | 0.88 | 132 | 364,731 | 0.90 |
Energy metabolism | 82 | 290,754 | 0.99 | 85 | 638,711 | 1.57 |
Intermediary metabolism | 16 | 18,384 | 0.06 | 16 | 33,194 | 0.08 |
Lipid metabolism | 183 | 258,154 | 0.88 | 196 | 305,605 | 0.75 |
Nucleotide metabolism | 58 | 94,988 | 0.32 | 62 | 52,976 | 0.13 |
Nuclear export | 32 | 310,812 | 1.06 | 32 | 119,450 | 0.29 |
Nuclear regulation | 205 | 545,375 | 1.86 | 205 | 366,541 | 0.90 |
Protein export machinery | 303 | 1,069,385 | 3.66 | 305 | 884,552 | 2.17 |
Protein modification machinery | 192 | 434,173 | 1.48 | 197 | 1,061,107 | 2.61 |
Proteasome | 176 | 819,051 | 2.80 | 176 | 505,338 | 1.24 |
Protein synthesis | 287 | 8,053,986 | 27.54 | 288 | 4,133,884 | 10.16 |
Signal transduction | 807 | 4,422,649 | 8.28 | 814 | 1,532,993 | 3.76 |
Storage | 18 | 99,099 | 0.34 | 19 | 97,785 | 0.24 |
Transcription factor | 131 | 406,243 | 1.39 | 132 | 222,886 | 0.55 |
Transcription machinery | 425 | 2,686,898 | 9.19 | 426 | 1,426,038 | 3.50 |
Transporters and channels | 381 | 1,226,355 | 4.19 | 397 | 793,366 | 1.95 |
Unknown | 680 | 1,097,518 | 3.75 | 769 | 1,469,774 | 3.61 |
Unknown, conserved | 1011 | 2,097,204 | 7.17 | 1024 | 3,759,621 | 9.24 |
Putative secreted | 2314 | 3,202,168 | 10.95 | 2592 | 14,865,642 | 36.53 |
Transposable elements | 544 | 314,820 | 1.08 | 567 | 961,273 | 2.36 |
Viral products | 37 | 179,294 | 0.61 | 39 | 2,818,989 | 6.93 |
Total | 8844 | 29,245,390 | 9337 | 40,693,036 |
Relative abundance of reads: number of reads within each functional class in one specific sialotranscriptome (unfed ticks or ticks fed for 72 h) / total number of reads in the same sialotranscriptome.