Table 2.

Conjunction FDR: Pleiotropic Loci in BMI and T2D (cFDR < 0.05).

RSID	ROLE	GENE	CHR	P.valueA	P.valueB	cFDR.AcB	cFDR.BcA	conjunction FDR
rs9930506	intronic	FTO	chr16	2.52E–124	1.90E–10	1.01E–123	1.90E–10	1.90E–10
rs10787472	intronic	TCF7L2	chr10	3.25E–07	1.30E–36	3.25E–07	6.63E–35	3.25E–07
rs2881654	intronic	PPARG	chr3	1.40E–06	3.40E–09	4.19E–06	7.82E–08	4.19E–06
rs849135	intronic	JAZF1	chr7	1.45E–05	1.70E–09	3.85E–05	7.08E–08	3.85E–05
rs4481184	intronic	IGF2BP2	chr3	0.0002524	4.50E–22	0.0003786	6.55E–20	0.0003786
rs7141420	intronic	NRXN3	chr14	8.66E–15	0.00025	4.68E–13	0.001125	0.001125
rs6795735	ncRNA_intronic	ADAMTS9–AS2	chr3	2.92E–05	2.00E–04	0.000555	0.00604	0.00604
rs12895330	intergenic	AKAP6, NPAS3	chr14	9.72E–05	0.00021	0.0016041	0.007245	0.007245
rs2334255	UTR3	GIPR	chr19	0.0008051	0.00034	0.0114503	0.0176422	0.0176422
rs1783598	intronic	FCHSD2	chr11	0.0003666	0.00052	0.0064359	0.0193556	0.0193556
rs12245680	intronic	TCF7L2	chr10	0.01444	1.10E–09	0.02527	6.70E–07	0.02527
rs17584208	intergenic	PSRC1, MYBPHL	chr1	4.58E–06	0.0016	0.000306	0.02976	0.02976
rs2488071	intergenic	HHEX, EXOC6	chr10	0.006642	4.70E–06	0.032103	0.0011194	0.032103
rs11979110	intergenic	KLF14, MIR29A	chr7	0.00288	9.70E–05	0.03456	0.0140973	0.03456
rs1473	intronic	PUM1	chr1	0.0004889	0.00092	0.0114403	0.03542	0.03542
rs10898868	intronic	ARAP1	chr11	0.002589	0.00044	0.0370227	0.03608	0.0370227
rs1996023	intergenic	GNPDA2, GABRG1	chr4	1.11E–20	0.025	1.93E–17	0.0375	0.0375
rs825461	intronic	ZNF664, FAM101A	chr12	0.0003917	0.0013	0.0114376	0.04472	0.04472
rs16945088	intronic	FTO	chr16	5.30E–09	0.0072	1.48E–06	0.045	0.045
rs9540493	intergenic	LOC10272396, LINC01052	chr13	3.95E–09	0.0057	1.22E–06	0.0456	0.0456
rs4238585	intergenic	GPR139, GP2	chr16	1.12E–08	0.0069	3.02E–06	0.0483	0.0483
rs12454712	intronic	BCL2	chr18	6.04E–06	0.0034	0.0004955	0.0485714	0.0485714
rs4474658	intergenic	C2CD4A, C2CD4B	chr15	0.009024	9.60E–06	0.0489874	0.0023849	0.0489874

Notes: P.valueA is the p value of BMI. P.valueB is the p value of T2D.