Table 1.

Paired-end read quality per sample.

Sample	Leaves A	Leaves B	Roots A	Roots B	Total
Total # of paired reads	97,494,163	93,384,797	30,270,702	128,496,278	349,645,940
Total # of paired reads after trimming	87,835,193	81,637,895	14,779,168	105,073,040	289,325,296
% of paired reads surviving trimming	90.09%	87.42%	48.82%	81.77%
GC content	46%	46.5%	40%	47%
Total # of assembled contigs					197,641
# of Trinity components					74,937
Total assembled bases					273,066,414
Mean contig length (bp)					1381.63
Contig N50 (bp)					2363
Contig GC%					39.05
Longest contig (bp)					16,102
# contigs > 1 kb					93,444
Contigs with SwissProt BLASTX hits					156,935
Contigs with KEGG annotation					119,797
Contigs with GO annotation					132,208