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. 2017 Nov 29;4:17063. doi: 10.1038/hortres.2017.63

Table 4. Top 10 biological processes, as determined by sub-network enrichment analysis, associated with genes in sweet orange that were significantly (P<0.05) upregulated or downregulated in response to CLas infection.

Ontology Gene name P-value
Upregulated biological processes
 Plant immunity GLIP1, MPK3, SOBIR1, EFR, ERF-1, NAC062, WRKY22, SNC4 3.43E−04
 Jasmonate response EFR, ERF-1, JAZ1, MYC2, ASK2, CML37 3.60E−04
 Shade avoidance COP1, PIF7, MYC2, BEE1 1.20E−03
 K+ Import/homeostasis RBOHD, SOS1, CHX20, ZIFL1 1.59E−03
 Cold acclimation MPK3, PPDK, COP1, RHL41, PHO1, CBF2, HSFA2,MYC2, CBF4 1.69E−03
 Disease resistance GLIP1,RBOHD,MPK3,SOBIR1,CCR1,VTC2,WIN2,PTF1,HSC70-1,HSP90.1,RPM1 1.92E−03
 Plant defense GLIP1,RBOHD,MPK3,SOBIR1,CCR1,FAB1,ERF-1,NAC062,MYC2,WRKY22,RPM1,YSL3,AAT1 2.26E−03
 Stomatal movement RBOHD,MPK3,PPDK,PUB18,COP1,NRT1.1,ERF-1,NHX2,HSC70-1,ALMT9,CHX20,ZIFL1 3.01E−03
 Floral organ abscission MPK3,HSL2,AGL15 3.45E−03
 Cryptochrome response COP1,SUB1 4.18E−03
     
Downregulated biological processes
 Root phototropism GN,PKS1 0.0006
 Response to ethylene stimulus EFE,ERS1,EBF1,EIN3,ETR2 0.0019
 Greening PORA,EIN3,RR12,PKS1 0.0030
 Hypocotyl shape GN,PKS1 0.0041
 Vascularization ZLL,GN,RR12 0.00427
 Leaf size AVP1,TCTP,ETR2 0.0054
 Hypocotyl growth MUR4,CYP83B1,EIN3,FHY1,ETR2,PKS1 0.00631
 Gene silencing EFE,DME,ZLL,EMB25 0.0071
 Cation transport AVP1,CNGC1 0.0076
 Translation elongation MTO1,TCTP 0.0076