Table 2.
Differentially expressed genes common for the two breeds Landrace and Duroc
| Gene symbol | Gene name | FDR L | FDR D |
|---|---|---|---|
| ACER2 | alkaline ceramidase 2 | 1.61E-02 | 3.74E-02 |
| ACTN4 | alpha-actinin | 1.52E-02 | 1.34E-02 |
| APP | amyloid beta A4 protein | 2.73E-02 | 1.34E-02 |
| ATG4A | autophagy related 4A, cysteine peptidase | 4.02E-03 | 2.13E-02 |
| BGN | Biglycan | 2.64E-02 | 1.88E-02 |
| BMP1 | bone morphogenetic protein 1 | 4.60E-02 | 1.09E-02 |
| SERPING1 | Serpin family G member 1 | 2.68E-02 | 1.89E-02 |
| GLMP | Glycosylated lysosomal membrane protein | 3.66E-03 | 3.59E-02 |
| C1R | complement component 1, r subcomponent | 4.29E-02 | 2.13E-02 |
| C4A | Sus scrofa complement C4 (C4), mRNA | 2.86E-02 | 1.84E-03 |
| CA4 | carbonic anhydrase IV | 4.06E-02 | 1.44E-02 |
| CAT | Catalase | 1.01E-02 | 1.24E-02 |
| CDC42EP1 | CDC42 effector protein (Rho GTPase binding) 1 | 4.93E-02 | 2.42E-02 |
| CITED1 | Sus scrofa Cbp/p300-interacting transactivator | 2.31E-02 | 1.11E-02 |
| ENSSSCG00000001711 | Uncharacterized protein | 3.89E-02 | 2.72E-02 |
| COL3A1 | collagen, type III, alpha 1 | 4.40E-02 | 3.59E-02 |
| COPZ2 | coatomer protein complex, subunit zeta 2 | 1.04E-02 | 4.75E-02 |
| CPED1 | cadherin-like and PC-esterase domain containing 1 | 4.51E-03 | 2.72E-02 |
| CSF1R | colony stimulating factor 1 receptor | 3.86E-02 | 2.92E-02 |
| CTDSPL | CTD small phosphatase-like | 1.52E-02 | 1.66E-02 |
| CTSA | cathepsin A | 2.43E-02 | 2.71E-02 |
| CTSB | Sus scrofa cathepsin B (CTSB) | 1.26E-02 | 9.65E-03 |
| CTSH | Sus scrofa cathepsin H (CTSH), mRNA | 2.07E-02 | 3.84E-02 |
| CYP11A1 | Sus scrofa cytochrome P450, family 11, subfamily A, polypeptide 1 | 1.58E-02 | 4.56E-02 |
| ENSSSCG00000028912 | Uncharacterized protein | 3.02E-02 | 2.72E-02 |
| CFD | Complement factor D | 4.02E-02 | 1.98E-02 |
| DNASE1L1 | deoxyribonuclease I-like 1 | 4.51E-03 | 3.59E-02 |
| ECHDC3 | enoyl CoA hydratase domain containing 3 | 1.21E-03 | 2.04E-02 |
| ENSSSCG00000024587 | Uncharacterized protein | 2.49E-02 | 2.64E-02 |
| ENSSSCG00000028244 | Uncharacterized protein | 2.41E-02 | 4.91E-02 |
| EDNRA | endothelin receptor type A | 4.56E-02 | 2.42E-02 |
| EFEMP2 | EGF containing fibulin-like extracellular matrix protein 2 | 4.86E-02 | 1.66E-02 |
| EHD2 | EH-domain containing 2 | 9.26E-03 | 1.20E-02 |
| ENSSSCG00000011239 | Uncharacterized protein | 3.85E-02 | 9.09E-03 |
| ENSSSCG00000021406 | Uncharacterized protein | 1.35E-02 | 4.85E-02 |
| ENSSSCG00000025934 | Uncharacterized protein | 2.75E-02 | 7.72E-03 |
| ENSSSCG00000029074 | Uncharacterized protein | 1.61E-02 | 3.58E-02 |
| EPHX1 | Sus scrofa epoxide hydrolase 1, microsomal (xenobiotic) (EPHX1) | 1.61E-02 | 1.11E-02 |
| FAH | fumarylacetoacetate hydrolase (fumarylacetoacetase) | 1.66E-02 | 8.16E-03 |
| FAM213A | family with sequence similarity 213, member A | 4.93E-02 | 1.01E-02 |
| FCGRT | Sus scrofa Fc fragment of IgG, receptor, transporter, alpha | 3.42E-02 | 4.56E-02 |
| FDXR | NADPH:adrenodoxin oxidoreductase, mitochondrial | 1.61E-02 | 1.29E-02 |
| FGFR1 | Fibroblast growth factor receptor 1 | 4.69E-02 | 1.21E-02 |
| ENSSSCG00000022236 | Uncharacterized protein | 4.02E-02 | 1.52E-02 |
| ENSSSCG00000002797 | Uncharacterized protein | 4.29E-02 | 2.22E-02 |
| GRK5 | G protein-coupled receptor kinase 5 | 4.60E-02 | 2.87E-03 |
| GSDMD | gasdermin D | 4.11E-02 | 1.36E-02 |
| ENSSSCG00000000620 | Uncharacterized protein | 2.01E-02 | 3.84E-03 |
| ITM2C | Sus scrofa integral membrane protein 2C | 4.71E-02 | 4.75E-02 |
| ENSSSCG00000004207 | Uncharacterized protein | 3.99E-02 | 2.36E-02 |
| LAMB2 | laminin, beta 2 (laminin S) | 1.23E-02 | 2.81E-02 |
| LAMC3 | laminin, gamma 3 | 1.30E-02 | 2.15E-02 |
| LIPA | lipase A, lysosomal acid, cholesterol esterase | 4.50E-02 | 3.84E-02 |
| ENSSSCG00000023235 | Uncharacterized protein | 2.63E-02 | 1.23E-02 |
| MAOB | monoamine oxidase B | 3.62E-02 | 2.50E-02 |
| NEU1 | sialidase 1 (lysosomal sialidase) | 4.11E-02 | 4.56E-02 |
| ENSSSCG00000022516 | Uncharacterized protein | 2.23E-02 | 4.97E-02 |
| PGAM1 | phosphoglycerate mutase 1 (brain) | 1.50E-02 | 1.29E-02 |
| PLCB1 | phospholipase C, beta 1 (phosphoinositide-specific) | 4.06E-02 | 4.75E-02 |
| PRDX2 | peroxiredoxin 2 | 4.02E-02 | 4.69E-02 |
| ENSSSCG00000016522 | Uncharacterized protein | 5.88E-03 | 1.20E-02 |
| SERTAD1 | SERTA domain containing 1 | 3.22E-02 | 4.35E-02 |
| ENSSSCG00000011357 | Uncharacterized protein | 3.87E-02 | 4.11E-02 |
| SLC1A5 | solute carrier family 1 (neutral amino acid transporter), member 5 | 4.99E-02 | 3.91E-02 |
| SLC41A1 | solute carrier family 41 (magnesium transporter), member 1 | 4.29E-02 | 7.39E-03 |
| SLC44A2 | Choline transporter-like protein 2 | 4.02E-02 | 1.12E-02 |
| SLC44A4 | Sus scrofa solute carrier family 44, member 4 (SLC44A4), mRNA | 4.98E-02 | 3.50E-02 |
| TMEM176B | transmembrane protein 176B | 4.40E-02 | 7.46E-03 |
| TNFAIP3 | tumor necrosis factor, alpha-induced protein 3 | 2.64E-02 | 5.56E-03 |
| TPM4 | tropomysin alpha-4 chain | 5.77E-03 | 3.10E-02 |
| VIM | Vimentin | 4.02E-02 | 1.12E-02 |
Genes differentially expressed in both breeds are presented with gene symbol, gene name and significance level (FDR) for Landrace (L) and Duroc (D)