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. 2017 Nov 28;18:526. doi: 10.1186/s12859-017-1928-x

Fig. 12.

Fig. 12

Determination of crop boundary along Z-axis. (a) Max projection of scaffold z-stack to [X, Z] plane, (b) integrated intensities horizontally along X to obtain a Z-profile, and (c) selection of Z frames at the inflection points (red) as the lower and upper boundaries. Note that the aspect ratio of a vertical slice above was changed for better display