Table 3. Comparative codon-usage analysis of viruses from S. alkalinus.
Frequency of [XYG + XYC] of S. alkalinus was computed from codon frequencies of RPB2 and TEF1-alpha protein coding genes sequenced previously [1], data for Colletotrichum sp. were from http://www.kazusa.or.jp.
| virus genes | [XYG + XYC] (%) |
hosts | [XYG + XYC] (%) |
|---|---|---|---|
| SaFV1 ORF1 | 54.6 | Sodiomyces alkalinus | 74.6 |
| SaFV1 ORF2 | 49.9 | ||
| SaPV1 CP | 66.3 | ||
| SaPV1 RdRp | 56.5 | ||
| CtParV1-SAL CP | 53.9 | ||
| CtParV1-SAL RdRp | 51.1 | ||
| CtParV1 CP | 57.4 | Colletotrichum sp. | 60–85 |
| CtParV1 RdRp | 54.5 |