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. 2017 Nov 8;81(4):e00036-17. doi: 10.1128/MMBR.00036-17

FIG 2.

FIG 2

General overview of the bioinformatic pipelines for the 16S rRNA gene microbial profiling and shotgun metagenomics. Starting from DNA extraction of a microbial community and subsequent sequencing, the pipeline generates taxonomic profiling of the microbiota and the reconstruction of microbial genomes with corresponding functional analyses of the genes.