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. 2017 Nov 3;9(11):328. doi: 10.3390/v9110328

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© 2017 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Blast Atlases. (a) Example of an original bin, PYO97_10 (coverage 13.9 ± 0.015), that was split into two bins: one made of the contiguous contigs closest to the reference in the middle until the orange contig, bin PYO97_10_85.139.47.48.59.38.5.35.15.78.55.44.14 (coverage 12.4 ± 0.014), and the second one, bin PYO97_10_3.8.10.28.42 (coverage 16.9 ± 0.025), containing the remaining contigs; (b) Merging of three bins PYO97_22, PYO97_3 and PYO97_14 into one PYO97_22.3.14 which covers the entire reference genome; (c) Collapsed bin in PYO2014; these three contigs have been grouped together to form a collapsed bin. The difference between a normal bin and a collapsed bin is the presence of overlapping contigs in the latter probably derived from shared sequences between species of the same phage family; (d) Corresponding draft genomes from the two samples aligning to the reference, Pseudomonas phage TL; (e) PYO97_27.21 and PYO2014_28 are highly similar and do not resemble any known sequence; (f) Alignment of PYO2014_28 to PYO97_27.21.

Blast Atlases. (a) Example of an original bin, PYO97_10 (coverage 13.9 ± 0.015), that was split into two bins: one made of the contiguous contigs closest to the reference in the middle until the orange contig, bin PYO97_10_85.139.47.48.59.38.5.35.15.78.55.44.14 (coverage 12.4 ± 0.014), and the second one, bin PYO97_10_3.8.10.28.42 (coverage 16.9 ± 0.025), containing the remaining contigs; (b) Merging of three bins PYO97_22, PYO97_3 and PYO97_14 into one PYO97_22.3.14 which covers the entire reference genome; (c) Collapsed bin in PYO2014; these three contigs have been grouped together to form a collapsed bin. The difference between a normal bin and a collapsed bin is the presence of overlapping contigs in the latter probably derived from shared sequences between species of the same phage family; (d) Corresponding draft genomes from the two samples aligning to the reference, Pseudomonas phage TL; (e) PYO97_27.21 and PYO2014_28 are highly similar and do not resemble any known sequence; (f) Alignment of PYO2014_28 to PYO97_27.21.