Table 1. Thermal melting (Tm) data for duplexes containing a single triazole linkage.
ON code | ON sequence (5′–3′) | DNA target |
RNA target |
||
T m a | ΔTm b | T m a | ΔTm b | ||
ON1 | CGACGMeCTTGCAGC | 64.2 | 62.8 | ||
ON2 | CGACGMeCtTLTGCAGC | 58.2 | –6.0 | 62.0 | –0.8 |
ON3 | CGACGMeCtTTG CAGC | 55.3 | –8.9 | 56.6 | –6.2 |
ON4 | CGACGMeCTLTGCAGC | 67.5 | +3.3 | 68.9 | +6.1 |
ON5 | CGACGMeCLtTTGCAGC | 52.7 | –11.5 | 55.5 | –7.2 |
ON6 | CGACGMeCLtTLTGCAGC | 58.4 | –5.8 | 62.9 | +0.1 |
aMelting temperatures (Tm) were obtained from the maxima of the first derivatives of the melting curves (A260vs. temperature) recorded in a buffer containing 10 mM phosphate and 200 mM NaCl at pH 7.0 using 3.0 μM concentrations of each strand.
bΔTm = change in Tm for a modified duplex relative to the unmodified duplex. TL is LNA thymidine, MeC is 5-methylcytosine and t is a triazole linkage (Fig. 1a). DNA target: 5′-dGCT GCA AGC GTC G. RNA target: 5′-rGCU GCA AGC GUC G.