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. 2017 Nov 30;13(11):e1005793. doi: 10.1371/journal.pcbi.1005793

Table 2. Functions ranked based on expression variability of genes.

Top 10 (green) and bottom 10 (red) functions are shown based on log fold change of expression based activity (that is, number of annotated genes present in the corresponding projected PIN), along with Δf, Δf divided (normalized) by the total number of genes annotated by the function, followed by the sample shuffling results, and the log fold change.

GO ID Description Δf Normalized Δf Δf (Sample shuffling) Normalized Δf (Sample Shuffling) log fold change
GO:0006342 chromatin silencing 38 0.74 -1 -0.01 0.08
GO:0006334 nucleosome assembly -310 -3.13 -3 -0.03 0.06
GO:0045814 negative regulation of gene expression, epigenetic 17 0.25 -3 -0.04 0.04
GO:0034728 nucleosome organization 4 0.03 -3 -0.02 0.03
GO:1990138 neuron projection extension -10 -0.20 -7 -0.14 0.03
GO:0016458 gene silencing 7 0.04 -6 -0.03 0.03
GO:0031060 regulation of histone methylation 19 0.37 -15 -0.29 0.03
GO:0065004 protein-DNA complex assembly 22 0.14 -11 -0.07 0.03
GO:0031047 gene silencing by RNA 4 0.04 -7 -0.07 0.02
GO:0071824 protein-DNA complex subunit organization 8 0.04 -3 -0.01 0.02
GO:1901379 regulation of potassium ion transmembrane transport 14 0.25 -3 -0.05 -0.12
GO:0043266 regulation of potassium ion transport 10 0.12 1 0.01 -0.12
GO:1904064 positive regulation of cation transmembrane transport 309 5.15 0 0 -0.10
GO:0019229 regulation of vasoconstriction 206 3.32 -1 -0.01 -0.10
GO:0001508 action potential 2 0.03 1 0.01 -0.09
GO:0048871 multicellular organismal homeostasis -9 -0.08 -2 -0.01 -0.09
GO:0051148 negative regulation of muscle cell differentiation -127 -2.49 -15 -0.29 -0.09
GO:0034764 positive regulation of transmembrane transport 3 0.03 -7 -0.07 -0.09
GO:0034767 positive regulation of ion transmembrane transport 205 2.38 5 0.05 -0.09
GO:0050891 multicellular organismal water homeostasis -31 -0.57 -5 -0.09 -0.09