Table 1.
Tested strains | Locus | Primers | Amplicon size (bp) | Ref |
---|---|---|---|---|
EPEC | bfp | F: AATGGTGCTTGCGCTTGCTGC | 326 | 49 |
R: GCCGCTTTATCCAACCTGGTAAG | ||||
eaeA | F: GACCCGGCACAAGCATAAGC | 384 | 50 | |
R: CCACCTGCAGCAACAAGAGG | ||||
ETEC | lt | F: GGCGACAGATTATACCGTGC | 450 | 49 |
R: CGGTCTCTATATTCCCTGTT | ||||
st | F: ATTTTTCTTTCTGTATTATCTTT | 190 | 49 | |
R: CCGGTACAAGCAGGATTACA | ||||
EIEC | ipaH | F: ATGCGAGAAATTAATATGCTCAG | 786 | This study |
R: GAATAGCAGAGTTTGATCTGATAAG | ||||
virF | F: AGCTCAGGCAATGAAACTTTGAC | 618 | 51 | |
R: TGGGCTTGATATTCCGATAAGTC | ||||
STEC | stx1 | F: TTCAGCAAGTGCGCTGGCGA | 212 | This study |
R: CGCTGAATCCCCCTCCATTA | ||||
stx2 | F: GGCGCGTTTTGACCATCTTCG | 518 | This study | |
R: GATGATGGCAATTCAGTATAACG | ||||
EAEC | aggR | F: GTATACACAAAAGAAGGAAGC | 254 | 51 |
R: ACAGAATCGTCAGCATCAGC | ||||
aap | F: GGCATCTTGGGTATCAGCCTG | 313 | This study | |
R: CCCATTCGGTTAGAGCACTATATT | ||||
Campylobacter jejuni | hipO | F: ACTTCTTTATTGCTTGCTGC | 323 | pubmlst.org/campylobacter |
R: GCCACAACAAGTAAAGAAGC | ||||
Campylobacter coli | F: TCAAGGCGTTTATGCTGCAC | 323 | pubmlst.org/campylobacter | |
R: CCATCACTTACAAGCTTATAC | ||||
Campylobacter | 23 rRNA | F: TATACCGGTAAGGAGTGCTGGAG | 650 | pubmlst.org/campylobacter |
R: ATCAATTAACCTTCGAGCACCG |
EPEC, enteropathogenic E. coli; ETEC, enterotoxigenic E. coli; EIEC, enteroinvasive E. coli; STEC, Shiga toxin-producing E. coli; EAEC, enteroaggregative E. coli; bfp, bundle-forming pilli; eaeA, intimin, effacing and attaching lesion; lt, heat labile toxin; st, heat-stable toxin; ipaH, invasion plasmid antigen; virF, virulence invasion factor; stx1, shiga toxin1; stx2, shiga toxin 2; aggR, aggregative adherence fimbriae I; aap, antigenic antiaggregative protein; hipO, hippurate hydrolysis.