Table 3.
Sequence analyses of the 27 C. suis MLST alleles and concatenated sequences
| Allele | Total number of polymorphisms (Δnt) | No. of non-synonymous substitutions | No. of synonymous substitutions | dN/dS ratio | Number of haplotypes |
|---|---|---|---|---|---|
|
gatA (425 bp) |
12 | 1 | 11 | 0.010 | 11 |
|
oppA_3 (468 bp) |
17 | 3 | 14 | 0.061 | 12 |
|
hflX (435 bp) |
24 | 2 | 22 | 0.022 | 18 |
|
gidA (474 bp) |
29 | 4 | 25 | 0.074 | 18 |
|
enoA (381 bp) |
23 | 1 | 22 | 0.007 | 23 |
|
hemN (432 bp) |
17 | 2 | 15 | 0.113 | 14 |
|
fumC (465 bp) |
14 | 2 | 12 | 0.024 | 14 |
| Concatenated (3080 bp) |
136 | 15 | 121 | - | 26 |