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. 2017 Nov 17;15(11):e2003583. doi: 10.1371/journal.pbio.2003583

Fig 3. Pseudogenization in the fusarielin-like SM gene cluster.

Fig 3

(A) Positions of frameshift variants and nonsense variants in the fusarielin-like SM gene cluster 4. (B) Locus phylogeny of the fusarielin-like SM gene cluster based on a nucleotide alignment of the entire gene cluster, including intergenic and noncoding regions. The phylogeny is midpoint rooted and branches with bootstrap support <80% are collapsed. Two branches were shortened for visualization purposes. Strains with pseudogenizing variants are indicated with colored boxes. Colors correspond to variants shown in (A). PKS, polyketide synthase; SM, secondary metabolite; SNV, single nucleotide variant.