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Run-time of each comparative method on the IRES_Picorna family of length 253 nt in the test set of simulated short genomes
| Method | # of processors used | Time (s) | Memory (MB) |
|---|---|---|---|
| DotcodeR | 1 | 6.00 | 4.46 |
| RNApdist | 1 | 144.55 | 4.60 |
Note that these results are only from real-against-real window comparison. The best performance is shown in bold face. This test was serially done on a server with Intel Xeon CPU 2.00 GHz with 8 cores and 65 GB memory
