Table 5.
List of homologous loci and their corresponding linkage groups.
| Marker | Linkage group | ||||
|---|---|---|---|---|---|
| Name | Type | Choa | T × Eb | EF × NYc | Peach chromd |
| EMPaS11 | SSR | 1 | – | 5 | 5 |
| CPSCT006 | SSR | 1 | 5 | – | 5 |
| RPPG7-032 | SSR | 2 | – | – | 7 |
| RPPG7-026 | SSR | 2 | – | – | 7 |
| PMS2 | SSR | 2 | 7 | 7 | 7 |
| RPPG7-023 | SSR | 2 | – | – | 7 |
| CPSCT004 | SSR | 2 | 7 | – | 7 |
| RPPG7-018 | SSR | 2 | – | – | 7 |
| RPPG1-026 | SSR | 3 | – | – | 1 |
| SSR8-E34 | SSR | 3 | – | – | 4 |
| RPPG1-029 | SSR | 3 | – | – | 1 |
| UDP97-402 | SSR | 3 | 2 | – | 2 |
| RPPG1-041 | SSR | 3 | – | – | 1 |
| PMS67 | SSR | 3 | – | 1 | 1 |
| BPPCT027 | SSR | 3 | 1 | – | 1 |
| BPPCT016 | SSR | 3 | 1 | – | 1 |
| BPPCT036 | SSR | 3 | 4 | – | 1 |
| UDP97-402 | SSR | 4 | 2 | – | 4 |
| UDP98-024 | SSR | 4 | 4 | – | 4 |
| PMS3 | SSR | 4 | – | 4 | 4 |
| SSR8-D78 | SSR | 4 | – | – | 4 |
| UDP98-022 | SSR | 4 | – | 1 | 1 |
| SSR8-D56 | SSR | 4 | – | – | 4 |
| RPPG4-074 | SSR | 4 | – | – | 4 |
| BPPCT040 | SSR | 4 | – | 4 | 4 |
| SSR8-E78 | SSR | 4 | – | – | 4 |
| BPPCT014 | SSR | 5 | 5 | 5 | 5 |
| BPPCT005 | SSR | 5 | – | 4 | 4 |
| BPPCT032 | SSR | 5 | 5 | – | 5 |
| RPPG6-018 | SSR | 5 | – | – | 6 |
| EMPaS01 | SSR | 6 | – | 6 | 6 |
| BPPCT008 | SSR | 6 | 6 | 6 | 6 |
| RPPG6-030 | SSR | 6 | – | – | 6 |
| RPPG6-010 | SSR | 6 | – | – | 6 |
| UDP98-412 | SSR | 6 | 6 | – | 6 |
| RPPG6-018 | SSR | 6 | – | – | 6 |
| RPPG6-024 | SSR | 6 | – | – | 6 |
| CPSCT012 | SSR | 6 | 6 | – | 6 |
| RPPG3-031 | SSR | 7 | – | – | 3 |
| RPPG3-030 | SSR | 7 | – | – | 3 |
| RPPG3-039 | SSR | 7 | – | – | 3 |
| PMS30 | SSR | 7 | – | 3 | 3 |
| BPPCT039 | SSR | 7 | 3 | – | 3 |
| BPPCT007 | SSR | 7 | 3 | – | 3 |
| PMS67 | SSR | 8 | 1 | 1 | 1 |
| BPPCT028 | SSR | 8 | 1 | – | 1 |
| BPPCT026 | SSR | 9 | 5 | 5 | 5 |
| BPPCT009 | SSR | 9 | 6 | 6 | 6 |
| CPDCT008 | SSR | 9 | 3 | – | 3 |
| BPPCT002 | SSR | 10 | 2 | 2 | 2 |
| BPPCT006 | SSR | 10 | 8 | 2,6 | 8 |
| BPPCT001 | SSR | 10 | 2 | – | 2 |
| BPPCT017 | SSR | 10 | 5 | – | 5 |
| RPPG5-008 | SSR | 10 | – | – | 5 |
| RPPG4-076 | SSR | 11 | – | – | 4 |
| RPPG7-029 | SSR | 11 | – | – | 7 |
| RPPG8-020 | SSR | 11 | – | – | 8 |
| RPPG6-038 | SSR | 11 | – | – | 6 |
| RPPG6-036 | SSR | 11 | – | – | 6 |
| RPPG1-025 | SSR | 11 | – | – | 1 |
| RPPG6-014 | SSR | 11 | – | – | 6 |
| RPPG4-097 | SSR | 11 | – | – | 4 |
| RPPG8-017 | SSR | 11 | – | – | 8 |
| RPPG8-031 | SSR | 11 | – | – | 8 |
| RPPG3-041 | SSR | 11 | – | – | 3 |
| RPPG6-009 | SSR | 11 | – | – | 6 |
| PMS3 | SSR | 12 | 4 | 4 | 4 |
| SSR8-F78 | SSR | 12 | – | – | 4 |
| BPPCT040 | SSR | 12 | 4 | 4 | 4 |
| RPPG4-084 | SSR | 12 | – | – | 4 |
| CPSCT021 | SSR | 13 | 2 | 2 | 2 |
| BPPCT012 | SSR | 13 | 8 | – | 8 |
| RPPG8-014 | SSR | 13 | – | – | 8 |
| RPPG8-011 | SSR | 13 | – | – | 8 |
| RPPG8-007 | SSR | 13 | – | – | 8 |
| BPPCT032 | SSR | 13 | 5 | – | 5 |
| RPPG8-030 | SSR | 13 | – | – | 8 |
| BPPCT013 | SSR | 14 | 2 | 4 | 2 |
| BPPCT002 | SSR | 14 | 2 | 2 | 2 |
| RPPG2-019 | SSR | 14 | – | – | 2 |
| SSR8-D1112 | SSR | 15 | – | – | 4 |
| RPPG1-017 | SSR | 15 | – | – | 1 |
| RPPG1-023 | SSR | 15 | – | – | 1 |
| PceGA59 | SSR | 15 | 1 | 1 | 1 |
| UCD-CH31 | SSR | 15 | – | 1 | 1 |
| BPPCT027 | SSR | 15 | 1 | – | 1 |
| BPPCT036 | SSR | 15 | 4 | – | 1 |
| RPPG6-033 | SSR | 16 | – | – | 6 |
| UDP98-021 | SSR | 16 | – | 6 | 6 |
| UDP98-408 | SSR | 16 | 7 | – | 7 |
| Total homologous loci shared: | 36 | 25 | 90 | ||
a
Chokecherry (“Cho”) linkage groups.
b
“Texas” almond × “Earlygold” peach (“T × E”) linkage groups.
c
“Emperor Francis” × “New York 54” (“EF × NY”) sweet cherry linkage groups.
d
Psuedochromosome number from the peach reference genome (The International Peach Genome Initiative et al., 2013).