Table 1.

Example of a bioCADDIE dataset

<DOC>

<DOCNO>215676</DOCNO>

<TITLE>VGlut-F-800286</TITLE>

<REPOSITORY>neuromorpho_030116</REPOSITORY>

<METADATA>

{

"dataItem": {

"dataTypes": ["dataset", "organism", "anatomicalPart", "treatment", "cell", "studyGroup", "dimension", "dataRepository", "organization"]

},

"studyGroup": {

"name": "Control"

},

"anatomicalPart": {

"name": ["Left Antennal Lobe", "Not reported"]

},

"dataRepository": {

"abbreviation": "NeuroMorpho",

"homePage": "http://neuromorpho.org/",

"name": "NeuroMorpho.Org",

"ID": "SCR:002145"

},

"dataset": {

"downloadURL": "http://neuromorpho.org/neuron_info.jsp?neuron_name=VGlut-F-800286",

"note": "Cell types and Brain regions were assigned with a <a href=\"techDocFlyData.jsp?code=1\">heuristic process</a> based on available metadata. This dataset was processed with a <a href=\"techDocFlyData.jsp?code=2\">streamlined automated variant</a> of the standardization procedure, additional details of which are published <a href=\http://www.ncbi.nlm.nih.gov/pubmed/?term=25576225\ target=\"_blank\">here</a>. Digital reconstruction used a <a href=\"http://www.ncbi.nlm.nih.gov/pubmed/?term=23028271\" target=\"_blank\">custom method</a> after image segmentation by Amira.",

"ID": "27187",

"title": "VGlut-F-800286"

},

"cell": {

"name": ["Principal cell", "Glutamatergic neuron", "day8 Born"]

},

"treatment": {

"title": "Green fluorescent protein (GFP)"

},

"organization": {

"abbreviation": "GMU",

"homePage": "http://www.gmu.edu/",

"name": "George Mason University",

"ID": "SCR:011213"

},

"organism": {

"strain": "VGlut-Gal4",

"scientificName": "",

"name": "Drosophila melanogaster",

"gender": "Female"

},

"dimension": [{"name": "age"}, {"name": "weight"}, {"name": "soma surface area"}, {"name": "surface area"}, {"name": "volume"}]

}

</METADATA>

</DOC>