Table 2:
Comparison analysis of genome sizes, assembly, and annotation of 4 palmae species, including coconut, Phoenix dacylifera (PDK30 and DPV01, 2 different versions), Elaeis guineensis (EG), and Elaeis oleifera (EO).
| Sequencing | Sequence | Estimated | Assembly | Contig | Scaffold | Gene | TEs, | |
|---|---|---|---|---|---|---|---|---|
| Species | technology | coverage | size, Gb | size, Gb | N50, Kb | N50, Kb | number | % |
| Phoenix dactylifera (PDK30) | Illumina GAIIx | ×53.4 | 0.66 | 0.38 | 6.44 | 30.48 | 28 889 | 23.6 |
| Phoenix dactylifera (DPV01) | 454, SOLiD, ABI3730 | ×139 | 0.67 | 0.56 | 10.81 | 334.08 | 41 660 | 38.87 |
| Elaeis guineensis (African oil palm) | 454 | ×16 | 1.8 | 1.54 | 9.37 | 1045.41 | 34 802 | 43.24 |
| Elaeis oleifera (American oil palm) | 454 | ×16 | 1.8 | 1.40 | 8.45 | 333.11 | – | – |
| Cocos nucifera (Hai nan Tall) | Illumina HiSeq | ×173 | 2.42 | 2.20 | 72.64 | 418.07 | 28 039 | 72.75 |
Coconut: Cocos nucifera (Hainan Tall); PDK30: Phoenix dactylifera (PDK30); DPV01: Phoenix dactylifera (DPV01); EG: Elaeis guineensis (Africanoil palm E5 build); EO: Elaeis oleifera (American oil palm, O8-build). TE results were obtained using the same pipeline as for the coconut genome