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. 2017 Oct 3;45(20):11800–11820. doi: 10.1093/nar/gkx860

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© The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 2. — Global response to nitrogen starvation in Synechocystis sp. PCC 6803. (A) MA plot: a scatterplot of log₂-fold-change (−N/NH₄) versus average expression in log₂ scale for each gene, produced using the DEseq2 package. Dots shown in red indicate differentially expressed genes with adj. P-value of < 0.1. The nine genes with the highest induction and repression are shown in blue and yellow, respectively. (B) GO enrichment analysis of differentially expressed genes under nitrogen starvation conditions. Only GO of biological processes and cellular components having a false-discovery rate of <0.1 are shown.