Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2017 Oct 3;45(20):11800–11820. doi: 10.1093/nar/gkx860

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

PMC Copyright notice

Figure 3. — Changes in expression of genes involved in nitrogen assimilation and carbon metabolism. This diagram shows metabolic pathways and metabolites of the TCA and GS/glutamine oxoglutarate amidotransferase (GOGAT) cycle, glycolysis, gluconeogenesis, pentose phosphate pathway (OPP) and glycogen metabolism. These pathways were predicted from the KEGG database (www.genome.jp/kegg/pathway.html). NtcA target genes obtained from ChIP-seq analysis are shown for −N (green square) or NH₄ (red square) treatments. Genes encoding metabolic enzymes are shown below; narB, nitrate reductase; nirA, nitrite reductase, gifA, GS-inactivating factor; gifB, GS-inactivating factor; glnA, GS type I; glnN, GS type III; gltD, glutamate synthase small subunit; gltB, GOGAT; glsF, ferredoxin-dependent glutamate synthase, gdhA, glutamate dehydrogenase; icd, isocitrate dehydrogenase; acnB, aconitate hydratase; citH, malate dehydrogenase; gltA, citrate synthase; odhB, pyruvate dehydrogenase; pyk1–2, pyruvate kinase; eno, enolase; ppc, phosphoenolpyruvate (PEP) carboxylase; gpmB, phosphoglycerate mutase; pgk phosphoglycerate kinase; gap1, glyceraldehyde-3-phosphate dehydrogenase (catabolic reaction); gap2, glyceraldehyde-3-phosphate dehydrogenase (anabolic reaction); tpi, glycogen isoamylase; cbbA, fructose-bisphosphate aldolase; fbp, fructose-1,6-bisphosphatase; pgl, 6-phosphogluconolactonase; pgm, phosphoglucomutase; glgC glucose-1-phosphate adenylyltransferase; glgP, glycogen phosphorylase; glgX, glycogen isoamylase; glgA, glycogen synthase; glgB, 1,4-alpha-glucan branching enzyme; zwf, glucose-6-phosphate dehydrogenase; gnd, 6-phosphogluconate dehydrogenase; tktA, transketolase; rpiA or B, ribose-5-phosphate isomerase; rpe, pentose-5-phosphate-3-epimerase; prk, phosphoribulokinase; rbcL, ribulose bisphosphate carboxylase large subunit; rbcS, ribulose bisphosphate carboxylase small subunit.